View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5133_low_10 (Length: 261)
Name: NF5133_low_10
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 46444551 - 46444290
Alignment:
| Q |
1 |
gttaagttatctcactttaacattgacaactcacaagagagaaagattggtaaataccaatataggtgatggcttgcaagatgcagaaaacttcacaatt |
100 |
Q |
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| T |
46444551 |
gttaagttatctcactttaacattaacaactcacaagagagaaagatcggtaaataccattataggtgatggcttgcaagatgcagaaaacttcacaatt |
46444452 |
T |
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| Q |
101 |
tgccattaaatttcaaatagttgttggtttattagttaatgtggttagttgttgtatgt-aatgcccatnnnnnnnnnnnnnnnnnnntatatggagggt |
199 |
Q |
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| T |
46444451 |
tgccattaaatttcaaatagttgttggtttattagttaatgtggttagttgttgtatgtcaatgcccataaaaagaaaagaaaagaaatatatggagggt |
46444352 |
T |
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| Q |
200 |
gatattggggcaacggaactgtgattgatggacactgttgttattattacacaatcacatta |
261 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46444351 |
gatattggggcaacggaactgtgactgatggacactgttgttattattacacaatcacatta |
46444290 |
T |
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