View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5133_low_13 (Length: 238)

Name: NF5133_low_13
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5133_low_13
NF5133_low_13
[»] chr1 (9 HSPs)
chr1 (19-222)||(5279210-5279413)
chr1 (19-71)||(32944754-32944806)
chr1 (19-71)||(42045363-42045415)
chr1 (23-70)||(12212317-12212364)
chr1 (27-71)||(3481587-3481631)
chr1 (27-71)||(16307675-16307719)
chr1 (27-71)||(29987103-29987147)
chr1 (27-71)||(32950752-32950796)
chr1 (27-71)||(43356461-43356505)
[»] chr8 (10 HSPs)
chr8 (19-71)||(29376919-29376971)
chr8 (19-71)||(7996958-7997010)
chr8 (19-71)||(24338195-24338247)
chr8 (20-71)||(27718885-27718936)
chr8 (27-72)||(11709012-11709057)
chr8 (19-52)||(37938740-37938773)
chr8 (19-71)||(12748919-12748971)
chr8 (19-71)||(12800891-12800943)
chr8 (19-71)||(19163527-19163579)
chr8 (19-71)||(32944831-32944883)
[»] chr7 (12 HSPs)
chr7 (27-71)||(3671850-3671894)
chr7 (19-70)||(19599163-19599214)
chr7 (29-71)||(5579721-5579763)
chr7 (27-72)||(19036092-19036137)
chr7 (27-72)||(20718499-20718544)
chr7 (27-71)||(2402500-2402544)
chr7 (19-63)||(17853181-17853225)
chr7 (20-72)||(18684149-18684200)
chr7 (19-71)||(27462427-27462479)
chr7 (19-71)||(30857266-30857318)
chr7 (27-71)||(46849098-46849142)
chr7 (19-71)||(48837885-48837937)
[»] chr6 (13 HSPs)
chr6 (19-71)||(9977075-9977127)
chr6 (19-69)||(20744156-20744206)
chr6 (18-71)||(27080795-27080848)
chr6 (19-71)||(4455587-4455639)
chr6 (23-71)||(5267045-5267094)
chr6 (22-71)||(9367422-9367471)
chr6 (27-68)||(13496142-13496183)
chr6 (27-71)||(788892-788936)
chr6 (19-71)||(8569727-8569779)
chr6 (27-71)||(12582220-12582264)
chr6 (27-71)||(15155761-15155805)
chr6 (27-71)||(27080689-27080733)
chr6 (23-71)||(27907942-27907990)
[»] chr5 (7 HSPs)
chr5 (19-71)||(39980526-39980578)
chr5 (18-63)||(17083592-17083637)
chr5 (28-69)||(24408522-24408563)
chr5 (27-71)||(6489033-6489077)
chr5 (27-71)||(15889437-15889481)
chr5 (19-71)||(19068431-19068482)
chr5 (19-71)||(22522792-22522844)
[»] chr4 (19 HSPs)
chr4 (18-69)||(6610280-6610331)
chr4 (19-71)||(11949754-11949806)
chr4 (27-71)||(38374983-38375027)
chr4 (29-71)||(17729454-17729496)
chr4 (18-72)||(47015558-47015612)
chr4 (19-72)||(6087765-6087818)
chr4 (27-72)||(19479467-19479512)
chr4 (27-72)||(22630350-22630395)
chr4 (23-71)||(8027388-8027436)
chr4 (19-71)||(9946445-9946497)
chr4 (19-71)||(21114296-21114348)
chr4 (27-71)||(21318244-21318288)
chr4 (27-71)||(22164260-22164304)
chr4 (27-71)||(24079831-24079875)
chr4 (19-71)||(24664982-24665034)
chr4 (19-71)||(27537766-27537817)
chr4 (27-71)||(37930838-37930882)
chr4 (19-71)||(43034333-43034385)
chr4 (20-68)||(43155098-43155146)
[»] chr3 (8 HSPs)
chr3 (19-71)||(25441491-25441543)
chr3 (25-71)||(29164744-29164790)
chr3 (30-71)||(14030726-14030767)
chr3 (19-71)||(25727958-25728010)
chr3 (27-71)||(26768427-26768471)
chr3 (27-71)||(34899123-34899167)
chr3 (19-71)||(38130950-38131002)
chr3 (19-71)||(40520770-40520822)
[»] chr2 (17 HSPs)
chr2 (27-71)||(17142856-17142900)
chr2 (19-71)||(31543030-31543082)
chr2 (19-71)||(36264470-36264522)
chr2 (20-71)||(9547400-9547451)
chr2 (20-71)||(10195653-10195704)
chr2 (28-71)||(15447705-15447748)
chr2 (18-71)||(12599856-12599909)
chr2 (22-71)||(23407009-23407058)
chr2 (19-72)||(34977222-34977275)
chr2 (19-72)||(41859870-41859923)
chr2 (19-71)||(660813-660865)
chr2 (19-71)||(2256989-2257041)
chr2 (27-71)||(24592837-24592881)
chr2 (19-71)||(25612284-25612336)
chr2 (19-71)||(28439560-28439612)
chr2 (27-71)||(29896285-29896329)
chr2 (27-71)||(31815878-31815922)
[»] scaffold0334 (1 HSPs)
scaffold0334 (19-71)||(5200-5252)
[»] scaffold0050 (1 HSPs)
scaffold0050 (27-71)||(53371-53415)
[»] scaffold0025 (1 HSPs)
scaffold0025 (19-71)||(64236-64288)
[»] scaffold0007 (1 HSPs)
scaffold0007 (23-71)||(221004-221052)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 5279413 - 5279210
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccaccatnnnnnnntacaattattccactgatccgaaaaagaaaattttgcat 118  Q
    ||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||       |||||||||||||| ||||||||||||||||||||||||    
T  5279413 gtatggacaatgcataatatatgcaatgtctggagttcaaacctcgaccaccataaaaaaatacaattattccaccgatccgaaaaagaaaattttgcat 5279314  T
Q  119 ttctctctttcctgcaaattaaccaagactaaactaaccttttatggataacctctgcaggttagaactagacagtttcatagtatgtttgtttttgcgg 218  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  5279313 ttctctctttccttcaaattaaccaagactaaactaaccttttatggataacctctgcaggttagaactagacagtttcatagtatgtttgtttccgcgg 5279214  T
Q  219 cctc 222  Q
    ||||    
T  5279213 cctc 5279210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 32944754 - 32944806
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||||||||||  ||| ||||||||||||||    
T  32944754 gtatggacaatgcataatatatgcaacgtctggggttcgaaccccgaccacca 32944806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 42045415 - 42045363
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||| ||||||    
T  42045415 gtatggacaatgcataatatatgcaaggtctggagttcaaaccccggccacca 42045363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 12212317 - 12212364
Alignment:
Q  23 ggataatgcataatatatgcaacgtctggacttcaaaccccgaccacc 70  Q
    |||||||||||||||||||||||||| ||  |||||||||||||||||    
T  12212317 ggataatgcataatatatgcaacgtccggggttcaaaccccgaccacc 12212364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 3481587 - 3481631
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||||||  ||||||||||| ||||||    
T  3481587 aatgcataatatatgcaaggtctggggttcaaaccccggccacca 3481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 16307675 - 16307719
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||||||   |||||||||||||||||    
T  16307675 aatgcataatatatgcaaggtctggggatcaaaccccgaccacca 16307719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 29987147 - 29987103
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||||||| ||| |||||| |||||||    
T  29987147 aatgcataatatatgcaaggtctggagttcgaaccccaaccacca 29987103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 32950796 - 32950752
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||| ||| |||||||| |||||||||    
T  32950796 aatgcataatatatgcaaggtccggagttcaaacctcgaccacca 32950752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 43356461 - 43356505
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||||| || || |||| ||||||||||||||||||    
T  43356461 aatgcataatatatgtaaggtttggagttcaaaccccgaccacca 43356505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 29376919 - 29376971
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||    
T  29376919 gtatggacaatgcgtaatatatgcaaggtctggagttcaaaccccgaccacca 29376971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 7996958 - 7997010
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| || ||||||||||||||| ||||||  ||||||||||||||||||    
T  7996958 gtatggacaacgcataatatatgcaaggtctggggttcaaaccccgaccacca 7997010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 24338247 - 24338195
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||| |||||||||||| |||||||| ||||| | ||||||||||||||||||    
T  24338247 gtatagataatgcataaaatatgcaaggtctgaagttcaaaccccgaccacca 24338195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 27718936 - 27718885
Alignment:
Q  20 tatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||| |||||||||||||||||| ||| ||| ||||||| ||||||||||    
T  27718936 tatggacaatgcataatatatgcaaggtccggagttcaaactccgaccacca 27718885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 11709012 - 11709057
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccaccat 72  Q
    |||||||||||||||||| ||| | | |||||||||||||||||||    
T  11709012 aatgcataatatatgcaaggtccgaagttcaaaccccgaccaccat 11709057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 37938773 - 37938740
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctgga 52  Q
    |||||||||||||||||||||||||| |||||||    
T  37938773 gtatggataatgcataatatatgcaaggtctgga 37938740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 12748919 - 12748971
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||  ||||||||||| ||||||    
T  12748919 gtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccacca 12748971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 12800943 - 12800891
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| ||| |||||||||||||| ||| ||  ||||||||||||||||||    
T  12800943 gtatggacaatacataatatatgcaaggtccggggttcaaaccccgaccacca 12800891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 19163579 - 19163527
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||| ||||||| ||| ||  ||||||||||||||||||    
T  19163579 gtatggacaatgcataatttatgcaaggtccggggttcaaaccccgaccacca 19163527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 32944883 - 32944831
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| ||||||||| |||||||| |||||   ||||||||||||||||||    
T  32944883 gtatggacaatgcataaaatatgcaaggtctgaggttcaaaccccgaccacca 32944831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 3671850 - 3671894
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||    
T  3671850 aatgcataatatatgcaaggtctggagttcaaaccccgaccacca 3671894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 19599163 - 19599214
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacc 70  Q
    ||||||| |||||||||||||||||| ||| ||  |||||||||||||||||    
T  19599163 gtatggacaatgcataatatatgcaaggtccggggttcaaaccccgaccacc 19599214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 5579721 - 5579763
Alignment:
Q  29 tgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  5579721 tgcataatatatgcaaggtctggggttcaaaccccgaccacca 5579763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 19036137 - 19036092
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccaccat 72  Q
    ||||||||| |||||||| ||||||| ||||||||||| |||||||    
T  19036137 aatgcataaaatatgcaaggtctggagttcaaaccccggccaccat 19036092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 20718499 - 20718544
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccaccat 72  Q
    ||||||||| |||||||| ||||||| ||||||||||| |||||||    
T  20718499 aatgcataaaatatgcaaggtctggagttcaaaccccggccaccat 20718544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 2402500 - 2402544
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||||||||||| || |||| | ||||||||    
T  2402500 aatgcataatatatgcaacgtctggagtttaaactcggaccacca 2402544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 17853181 - 17853225
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaacccc 63  Q
    |||| ||||||| ||||||||||||| ||||||| ||||||||||    
T  17853181 gtattgataatgtataatatatgcaaggtctggagttcaaacccc 17853225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 18684149 - 18684200
Alignment:
Q  20 tatggataatgcataatatatgcaacgtctggacttcaaaccccgaccaccat 72  Q
    ||||||||||||||||| ||||||| ||| ||  |||||||||||||||||||    
T  18684149 tatggataatgcataatgtatgcaaggtccgg-gttcaaaccccgaccaccat 18684200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 27462479 - 27462427
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||  ||||||||||| ||||||    
T  27462479 gtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccacca 27462427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 30857266 - 30857318
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| || | || |||||||||| |||||||    
T  30857266 gtatggacaatgcataatatatgcaaggttttgagttcaaaccccaaccacca 30857318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 46849142 - 46849098
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||||| || || |||| ||||||||||||||||||    
T  46849142 aatgcataatatatgtaaagtttggagttcaaaccccgaccacca 46849098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 48837885 - 48837937
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||||||||||| || |||  ||| ||||||| ||||||    
T  48837885 gtatggataatgcataatatatgcaaagtttggggttcgaaccccggccacca 48837937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 9977075 - 9977127
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  9977075 gtatggataatgcataatatatgcaaggtctggggttcaaaccctgaccacca 9977127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 20744156 - 20744206
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccac 69  Q
    ||||||| |||||||||||||||||| ||||||  ||||||||||||||||    
T  20744156 gtatggacaatgcataatatatgcaaggtctggggttcaaaccccgaccac 20744206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 27080848 - 27080795
Alignment:
Q  18 agtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||| ||| ||||||||||||||||||  |||||| ||||||||||||||||||    
T  27080848 agtagggacaatgcataatatatgcaagctctggaattcaaaccccgaccacca 27080795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 4455639 - 4455587
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| || ||||||||||||||| ||||||  ||||||||||||||||||    
T  4455639 gtatggacaaggcataatatatgcaaggtctggggttcaaaccccgaccacca 4455587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 5267045 - 5267094
Alignment:
Q  23 ggataatgcat-aatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||| ||||||||||| ||| ||| ||||||||||||||||||    
T  5267045 ggataatgcattaatatatgcaaggtccggaattcaaaccccgaccacca 5267094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 9367422 - 9367471
Alignment:
Q  22 tggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||| ||||||||| |||||||| ||||||  ||||||||||||||||||    
T  9367422 tggacaatgcataaaatatgcaaggtctgggattcaaaccccgaccacca 9367471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 13496142 - 13496183
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgacca 68  Q
    |||||||||||||||||| ||| ||| |||||||||||||||    
T  13496142 aatgcataatatatgcaaggtccggagttcaaaccccgacca 13496183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 788892 - 788936
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||  ||| ||||||||||||||||||    
T  788892 aatgcataatatatgcaaggttcggagttcaaaccccgaccacca 788936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 8569727 - 8569779
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||  ||||||||||| ||||||    
T  8569727 gtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccacca 8569779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 12582264 - 12582220
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||| |||||||| ||||||| ||||||||||| ||||||    
T  12582264 aatgcataaaatatgcaaggtctggagttcaaaccccggccacca 12582220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 15155761 - 15155805
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||||||  |||||||| |||||||||    
T  15155761 aatgcataatatatgcaaggtctggggttcaaaccacgaccacca 15155805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 27080733 - 27080689
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||||||||  |||||  ||||||||||||||||||    
T  27080733 aatgcataatatatgcaagctctgggattcaaaccccgaccacca 27080689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 27907990 - 27907942
Alignment:
Q  23 ggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||| |||||||| ||||||  ||||||||||| ||||||    
T  27907990 ggataatgcataaaatatgcaaggtctggggttcaaaccccggccacca 27907942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 39980526 - 39980578
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||    
T  39980526 gtatggataatgcataaaatatgcaaggtccggagttcaaaccccgaccacca 39980578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 17083637 - 17083592
Alignment:
Q  18 agtatggataatgcataatatatgcaacgtctggacttcaaacccc 63  Q
    |||| ||||||||||||||||||| || ||||||| ||||||||||    
T  17083637 agtagggataatgcataatatatgtaaggtctggagttcaaacccc 17083592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 24408522 - 24408563
Alignment:
Q  28 atgcataatatatgcaacgtctggacttcaaaccccgaccac 69  Q
    ||||||||||||||||| ||||||  ||||||||||||||||    
T  24408522 atgcataatatatgcaaggtctggggttcaaaccccgaccac 24408563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 6489033 - 6489077
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||||||  ||||||||||| ||||||    
T  6489033 aatgcataatatatgcaaggtctggggttcaaaccccggccacca 6489077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 15889437 - 15889481
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| |||| |  ||||||||||||||||||    
T  15889437 aatgcataatatatgcaaggtctagggttcaaaccccgaccacca 15889481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 19068482 - 19068431
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||||||||||| || |||  |||||||||||| |||||    
T  19068482 gtatggataatgcataatatatgcaaggt-tggggttcaaaccccgatcacca 19068431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 22522844 - 22522792
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||  ||||||||||| ||||||    
T  22522844 gtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccacca 22522792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 6610280 - 6610331
Alignment:
Q  18 agtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccac 69  Q
    ||||||||||||| ||||||||||||| ||||||  ||||||||||||||||    
T  6610280 agtatggataatgtataatatatgcaaggtctggggttcaaaccccgaccac 6610331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 11949806 - 11949754
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||  ||||||||||||||||||    
T  11949806 gtatggacaatgcataatatatgcaaggtccggggttcaaaccccgaccacca 11949754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 38374983 - 38375027
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||    
T  38374983 aatgcataatatatgcaaggtctggagttcaaaccccggccacca 38375027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 17729454 - 17729496
Alignment:
Q  29 tgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  17729454 tgcataatatatgcaaggtctggggttcaaaccccgaccacca 17729496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 47015612 - 47015558
Alignment:
Q  18 agtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccaccat 72  Q
    |||||||| |||||||||||||| ||| ||||||  ||||||| |||||||||||    
T  47015612 agtatggacaatgcataatatatacaaggtctggggttcaaactccgaccaccat 47015558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 6087765 - 6087818
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccaccat 72  Q
    |||| ||||||||||||||||||||| ||||||  ||||||||||  |||||||    
T  6087765 gtatagataatgcataatatatgcaaggtctggggttcaaaccccagccaccat 6087818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 19479512 - 19479467
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccaccat 72  Q
    |||||||||||||||||| ||| ||  |||||||||||||||||||    
T  19479512 aatgcataatatatgcaaggtccggggttcaaaccccgaccaccat 19479467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 22630395 - 22630350
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccaccat 72  Q
    |||||||||||||||||| |||||   |||||||||||||||||||    
T  22630395 aatgcataatatatgcaaggtctgaggttcaaaccccgaccaccat 22630350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 8027436 - 8027388
Alignment:
Q  23 ggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||||||||||||  || ||  ||||||||||||||||||    
T  8027436 ggataatgcataatatatgcaagatcgggggttcaaaccccgaccacca 8027388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 9946445 - 9946497
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| ||||||||| |||||||| ||| ||  ||||||||||||||||||    
T  9946445 gtatggacaatgcataaaatatgcaaggtccggggttcaaaccccgaccacca 9946497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 21114348 - 21114296
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| ||||||| |||||||||| ||| ||  ||||||||||||||||||    
T  21114348 gtatggacaatgcatgatatatgcaaggtccggggttcaaaccccgaccacca 21114296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 21318288 - 21318244
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| |||| |  ||||||||||||||||||    
T  21318288 aatgcataatatatgcaaggtctagggttcaaaccccgaccacca 21318244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 22164304 - 22164260
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||||| || ||||||  ||||||||||||||||||    
T  22164304 aatgcataatatatgtaaggtctggggttcaaaccccgaccacca 22164260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 24079875 - 24079831
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||| |||||||| ||| ||| ||||||||||||||||||    
T  24079875 aatgcataaaatatgcaaggtccggagttcaaaccccgaccacca 24079831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 24665034 - 24664982
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||  ||| ||||||||||||||    
T  24665034 gtatggagaatgcataatatatgcaaggtccggggttcgaaccccgaccacca 24664982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 27537766 - 27537817
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||| ||||||||||| ||||||    
T  27537766 gtatggacaatgcataatatatgcaaggtc-ggaattcaaaccccggccacca 27537817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 37930882 - 37930838
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| |||||   ||||||||||||||||||    
T  37930882 aatgcataatatatgcaaggtctgaggttcaaaccccgaccacca 37930838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 43034385 - 43034333
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| |||||   ||||||||||| ||||||    
T  43034385 gtatggacaatgcataatatatgcaaggtctgaggttcaaaccccggccacca 43034333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 43155098 - 43155146
Alignment:
Q  20 tatggataatgcataatatatgcaacgtctggacttcaaaccccgacca 68  Q
    |||||||||||||||||||||||||  ||||   |||||||||||||||    
T  43155098 tatggataatgcataatatatgcaagatctgaggttcaaaccccgacca 43155146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 25441543 - 25441491
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||||||  ||||||||||| ||||||    
T  25441543 gtatggacaatgcataatatatgcaaggtctggggttcaaaccccggccacca 25441491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 29164790 - 29164744
Alignment:
Q  25 ataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||| ||||||||||||| ||||||  ||||||||||||||||||    
T  29164790 ataatgtataatatatgcaaagtctggggttcaaaccccgaccacca 29164744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 14030767 - 14030726
Alignment:
Q  30 gcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||||| || |||| ||||||||||||||||||    
T  14030767 gcataatatatgcaaggtttggagttcaaaccccgaccacca 14030726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 25728010 - 25727958
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||  |||||| |||||||||||    
T  25728010 gtatggacaatgcataatatatgcaaggtccggggttcaaatcccgaccacca 25727958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 26768427 - 26768471
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||| |||||||| |||||  |||||||||||||||||||    
T  26768427 aatgcataaaatatgcaaggtctgagcttcaaaccccgaccacca 26768471  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 34899123 - 34899167
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||    
T  34899123 aatgcataatatatgcaaggtccggggttcaaaccccgaccacca 34899167  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 38131002 - 38130950
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||  ||||||||||| ||||||    
T  38131002 gtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccacca 38130950  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 40520770 - 40520822
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||||||| |||||||| |||   | ||||||||||||||||||    
T  40520770 gtatggataatgcataaaatatgcaaggtccaaagttcaaaccccgaccacca 40520822  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 17142856 - 17142900
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||||    
T  17142856 aatgtataatatatgcaaagtctggagttcaaaccccgaccacca 17142900  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 31543030 - 31543082
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||||||||||| ||| ||  |||||||||| |||||||    
T  31543030 gtatggataatgcataatatatgcaaggtccggggttcaaaccccaaccacca 31543082  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 36264522 - 36264470
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||||||||||| ||  ||  ||||||||||||||||||    
T  36264522 gtatggataatgcataatatatgcaaagttcggggttcaaaccccgaccacca 36264470  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 9547451 - 9547400
Alignment:
Q  20 tatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||| |||||||||||||||||| || |||  ||||||||||||||||||    
T  9547451 tatggacaatgcataatatatgcaaggtttggggttcaaaccccgaccacca 9547400  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 10195704 - 10195653
Alignment:
Q  20 tatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||||||||||  |||||| ||||||||| || |||||    
T  10195704 tatggataatgcataatatatgcaagatctggagttcaaaccctgatcacca 10195653  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 15447748 - 15447705
Alignment:
Q  28 atgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||||    
T  15447748 atgcataatatatgcaaggtctggagttcaaaccccggccacca 15447705  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 12599909 - 12599856
Alignment:
Q  18 agtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||| ||| |||||||||||||| ||||||  ||| ||||||||||||||    
T  12599909 agtatggacaatacataatatatgcaaggtctggggttcgaaccccgaccacca 12599856  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 23407058 - 23407009
Alignment:
Q  22 tggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||| |||||||||||||||||| ||||||  ||||||||| ||||||||    
T  23407058 tggacaatgcataatatatgcaaggtctggggttcaaaccctgaccacca 23407009  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 34977222 - 34977275
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccaccat 72  Q
    ||||||| |||||||||||||||||| ||| ||| || |||||||| |||||||    
T  34977222 gtatggacaatgcataatatatgcaaggtccggagtttaaaccccggccaccat 34977275  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 41859870 - 41859923
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccaccat 72  Q
    ||||||| ||||||||| |||||||| ||||||  ||||||||||| |||||||    
T  41859870 gtatggacaatgcataaaatatgcaaggtctggggttcaaaccccggccaccat 41859923  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 660865 - 660813
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| |||  |  ||||||||||||||||||    
T  660865 gtatggacaatgcataatatatgcaaggtccagggttcaaaccccgaccacca 660813  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 2256989 - 2257041
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||||||  ||| ||||||| ||||||    
T  2256989 gtatggacaatgcataatatatgcaaggtctggggttcgaaccccggccacca 2257041  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 24592881 - 24592837
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||||||  ||||||||||| ||||||    
T  24592881 aatgcataatatatgcaaggtctggggttcaaaccccggccacca 24592837  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 25612336 - 25612284
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||    
T  25612336 gtatggacaatgcataatatatgcaaggtccgggattcaacccccgaccacca 25612284  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 28439612 - 28439560
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||||||||||| |||||||| |||||   ||||||| ||||||||||    
T  28439612 gtatggataatgcataaaatatgcaaggtctgatgttcaaactccgaccacca 28439560  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 29896329 - 29896285
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| || |||  ||||||||||||||||||    
T  29896329 aatgcataatatatgcaaggtttggggttcaaaccccgaccacca 29896285  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 31815922 - 31815878
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||    
T  31815922 aatgcataatatatgcaaggtccggggttcaaaccccgaccacca 31815878  T

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Target: scaffold0334 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 5200 - 5252
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| |||||   |||||||||| |||||||    
T  5200 gtatggacaatgcataatatatgcaaggtctgaggttcaaaccccaaccacca 5252  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 53415 - 53371
Alignment:
Q  27 aatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||||| |||||||| ||||||  ||||||||||||||||||    
T  53415 aatgcataaaatatgcaaggtctggggttcaaaccccgaccacca 53371  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 64236 - 64288
Alignment:
Q  19 gtatggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||||||| ||| ||  ||| ||||||||||||||    
T  64236 gtatggacaatgcataatatatgcaaggtccgggattcgaaccccgaccacca 64288  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 221052 - 221004
Alignment:
Q  23 ggataatgcataatatatgcaacgtctggacttcaaaccccgaccacca 71  Q
    ||||||| |||||||||||||| |||| |  ||||||||||||||||||    
T  221052 ggataatacataatatatgcaaagtctagggttcaaaccccgaccacca 221004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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