View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5133_low_2 (Length: 498)
Name: NF5133_low_2
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Complemental strand, 7723194 - 7722734
Alignment:
| Q |
8 |
tgagatgaacgatgcatcattctttgtgaaaaagagtaatggaaaatgaatgatttgaagggnnnnnnnagagtagagtagagtagagaagagtgaattg |
107 |
Q |
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| T |
7723194 |
tgagatgaacgatgcatcattctttgtgaaaaagagtaatggaaaatgaatgatttgaaggg----------gttttttagagtagagaagagtgaattg |
7723105 |
T |
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| Q |
108 |
ttgtcttgtagtgtttgaagataataaaatgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaat |
207 |
Q |
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| T |
7723104 |
ttgtcttgtagtgtttgaagataataaaatgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaat |
7723005 |
T |
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| Q |
208 |
acaaaatatatatagtaaaggagataaaattatagagcatannnnnnnnnnnnggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtg |
307 |
Q |
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| T |
7723004 |
acaaaatatatatagtaaaggagataaaattataaagcataagagagagag--ggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtg |
7722907 |
T |
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| Q |
308 |
tgtaatgtaagcaagtgtttgagtttctattatatctctgcagaattactactgtttatgacacccttcatgtatgattttgatttcttcttgcataatg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
7722906 |
tgtaatgtaagcaagtgtttgagtttctattatatctctgcagaattactactgtttatgacacccttcatgtatcattttgatttcttcttgaataatg |
7722807 |
T |
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| Q |
408 |
catagtttcaatttatactagtagaaagatcataaagataaagaaagagaaagagaggattgtgttgtgttgt |
480 |
Q |
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| T |
7722806 |
catagtttcaatttatactagtagaaagatcataaagataaagaaagagaaagagagggttgtgttgtgttgt |
7722734 |
T |
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