View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5133_low_3 (Length: 447)
Name: NF5133_low_3
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 447
Target Start/End: Complemental strand, 44809207 - 44808770
Alignment:
| Q |
9 |
agcacagaagcatgaatgagttgaagatggtggtggtggaagaagagagagtgatataactgccattgaaattgaaattgaaat------agaattatga |
102 |
Q |
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| T |
44809207 |
agcacagaagcatgaatgagttgaagatggtggtggtggaagaagagagagtgatataactgccattgaaattgaaattgaaattgaaatagaattatga |
44809108 |
T |
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| Q |
103 |
agaaaagtatgatatgttcatgattttaacgcccgcttgaattgttagtgggtaaaatgttaaaaagaatcgggttttatgggttctgctt------gct |
196 |
Q |
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| T |
44809107 |
agaaaagtatgatatgttcatgattttaacgcccgcttgaattgttagtgggtaaaatgttaaaaagaatcgggttttatgggttctgcttctgcttgct |
44809008 |
T |
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| Q |
197 |
gaactggactggactactggtattggtacatacataccagagaggaagacactcactgggacccacaactaccagataataagttgtggcttattgctag |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44809007 |
gaactggactggactactggtattggtacatacataccagagaggaagacactcactgggacccacaactaccagataa---gttgtggcttattgctag |
44808911 |
T |
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| Q |
297 |
cctcgtcttctttctgcaaatttatttttctctacatactcaaataatgtatgtaatttattagtcaccaaaacaatttgagacaattttcatataattg |
396 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44808910 |
cctcgtcttctttctgcaaatttattcttctctacatactcaaataatgtatgtaatttattagtcaccaaaaca----------attttcatataattg |
44808821 |
T |
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| Q |
397 |
attcttatcaaaaactaatttataattttgatactaatgacttattttagt |
447 |
Q |
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| T |
44808820 |
attcttatcaaaaactaatttataattttgatactaatgacttattttagt |
44808770 |
T |
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