View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5133_low_4 (Length: 396)
Name: NF5133_low_4
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 7 - 379
Target Start/End: Complemental strand, 54181253 - 54180881
Alignment:
| Q |
7 |
taaattattcttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagcgttttgaagaaatagctactacaccctc |
106 |
Q |
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| T |
54181253 |
taaattattcttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagcgttttgaagaaatagctactacaccctc |
54181154 |
T |
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| Q |
107 |
aaatttttcttcccatcttgatgaaactatttgttgtaccactactactaatcaaaacaatgttaccaatattggagccacatatgcacccatagtttcc |
206 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181153 |
aaatttttcttcccattttgatgaaactatttgttgtaccactactactaatcaaaacaatgttaccaatattggagccacatatgcacccatagtttcc |
54181054 |
T |
|
| Q |
207 |
cctcctttgattgaagagaatgtcgatgaagtatttacgaagctgtccccaacaattctcgatccttgtttaggccgatatatttacgtttatgatcttc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181053 |
cctcctttgattgaagagaatgtcgatgaagtatttacgaagctgtccccaacaattctcgatccttgtttaggccgatatatttacgtttatgatcttc |
54180954 |
T |
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| Q |
307 |
ctagtaggttcaataaggatttgttgaaaaggtgtcacactctcttgaagtgggaagatttgtgtctttactt |
379 |
Q |
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| T |
54180953 |
ctagtaggttcaataaggatttgttgaaaagatgccacactctcttgaagtgggaagatttgtgtctttactt |
54180881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 377
Target Start/End: Original strand, 41942078 - 41942246
Alignment:
| Q |
209 |
tcctttgattgaagagaatgtcgatgaagtatttacgaagctgtccccaacaattctcgatccttgtttaggccgatatatttacgtttatgatcttcct |
308 |
Q |
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| T |
41942078 |
tcctttgattaaacacaatgttgatgaagtatttaaaaagttgccgccaaaaattatggatccttgtttaggtcagtatatctatgtttatgatcttcct |
41942177 |
T |
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| Q |
309 |
agtaggttcaataaggatttgttgaaaaggtgtcacactctcttgaagtgggaagatttgtgtctttac |
377 |
Q |
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| T |
41942178 |
gctagattcaatgaggatttgttgaaaggatgccactctctacagaagtgggaaaatatgtgtgtttac |
41942246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 41947650 - 41947718
Alignment:
| Q |
267 |
gatccttgtttaggccgatatatttacgtttatgatcttcctagtaggttcaataaggatttgttgaaa |
335 |
Q |
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| T |
41947650 |
gatccttgtttaggccaatatatctatgtttatgatcttcctgctagattcaatgaggatttgttgaaa |
41947718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 41947547 - 41947608
Alignment:
| Q |
17 |
ttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagc |
78 |
Q |
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| T |
41947547 |
ttatttggctagcaataatagtggaatgacattcttactttctaacatgaacaatgcaaagc |
41947608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 22794153 - 22794262
Alignment:
| Q |
270 |
ccttgtttaggccgatatatttacgtttatgatcttcctagtaggttcaataaggatttgttgaaaaggtgtcacactctcttgaagtgggaagatttgt |
369 |
Q |
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||||||||||||| |||||| || || ||||||||||||||| | |||||| | || ||||||||| | || |||| ||| | ||||||||| || ||| |
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| T |
22794153 |
ccttgtttaggccaatatatatatgtctatgatcttcctagtcgattcaatgatgacttgttgaaaggatgcaacacactcattaagtgggaaaatatgt |
22794252 |
T |
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| Q |
370 |
gtctttactt |
379 |
Q |
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||| |||||| |
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| T |
22794253 |
gtccttactt |
22794262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 1210301 - 1210362
Alignment:
| Q |
17 |
ttatttggctagcaatgatagtgaaatcacattcttatttcctaacatgaataatgcaaagc |
78 |
Q |
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|||||||||||||||| |||||| ||| |||||||| ||||||||||||| |||||||||| |
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| T |
1210301 |
ttatttggctagcaataatagtggaatggcattcttacttcctaacatgaacaatgcaaagc |
1210362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 1210404 - 1210472
Alignment:
| Q |
267 |
gatccttgtttaggccgatatatttacgtttatgatcttcctagtaggttcaataaggatttgttgaaa |
335 |
Q |
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| T |
1210404 |
gatccttgtttaagccaatatatctatatttatgatcttcctgctagattcaatgtggatttgttgaaa |
1210472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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