View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5133_low_6 (Length: 343)
Name: NF5133_low_6
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 301
Target Start/End: Complemental strand, 40203089 - 40202932
Alignment:
| Q |
146 |
agtgatgttggaagtcaaagagaggaaaggaagagacacaaagaggnnnnnnnnnnnnnnn--ctgttacccttttgagcactcttgcttataatattaa |
243 |
Q |
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| T |
40203089 |
agtgatgttggatgtcaaagagaggaaaggaagagacacaaagagggtgttgtgtgtgtgtgtctgttgcccttttgagcactcttgcttataatattaa |
40202990 |
T |
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| Q |
244 |
atgagttgaataaacgtgttgtgtaactagtttatgtaatgaaggaagatggtgttga |
301 |
Q |
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| T |
40202989 |
atgagttgaataaacgtgttgtgtaactagtttatgcaatgaaggaagatggtgttga |
40202932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 40203226 - 40203146
Alignment:
| Q |
1 |
aataatgtatttagaagggtggttgattaataattatttattaattatgagacagaaacttgcaagaaggtttaattcttg |
81 |
Q |
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| T |
40203226 |
aataatgtatttagaagggtggttgattaataattatttattaattatgagacagaaacttgcaagaacgtttaattcttg |
40203146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 40207243 - 40207200
Alignment:
| Q |
146 |
agtgatgttggaagtcaaagagaggaaaggaagagacacaaaga |
189 |
Q |
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| T |
40207243 |
agtgatgttggaagtcaaagagaggaaaggatgagacacaaaga |
40207200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 40207174 - 40207091
Alignment:
| Q |
213 |
cccttttgagcactcttgcttataa---tattaaatgagttgaataaacgtgttgtgtaactagtttatgtaatgaaggaagatggtgt |
298 |
Q |
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| T |
40207174 |
cccttttgggcactcttgcttataacaatattagatgatttgaataaacgtgt---gt--ctagtttatgtaatgaaggaagatggtgt |
40207091 |
T |
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