View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5133_low_7 (Length: 341)
Name: NF5133_low_7
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 38521563 - 38521645
Alignment:
| Q |
139 |
taatatgtgtcggcaggaacaacatgaaattactaaaggggacacaaaaacataatcaaaacaaatcatgggaacataatcag |
221 |
Q |
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| T |
38521563 |
taatatgtgtcggcaggaacaacatgaaattactaaaggggacacaaaaacataatcaaaacaaatcatgggaacataatcag |
38521645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 38521433 - 38521494
Alignment:
| Q |
9 |
gacatcatcacactcagtcatgcataattttaggaaaagagtgcacaaactgagtagggaat |
70 |
Q |
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| T |
38521433 |
gacatcatcacactcagtcatgcataattttaggaaaagagtgcacaaactgagtagggaat |
38521494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 38521707 - 38521750
Alignment:
| Q |
283 |
ttgttcatcaaagtgaccaggtgaaatttgaagagcattataat |
326 |
Q |
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| T |
38521707 |
ttgttcatcaaagtgaccaggtgaaatttgaagagcattataat |
38521750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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