View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5133_low_9 (Length: 299)
Name: NF5133_low_9
Description: NF5133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5133_low_9 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 40203500 - 40203218
Alignment:
| Q |
17 |
gagacttaattaccggttcgtttgacacgaccatcgtcgtcgaaaaacttagaatctctttgttgatcaatggagatatcaaatgtttggtgatgattcg |
116 |
Q |
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| T |
40203500 |
gagacttaattaccggttcgtttgacacgaccatcgtcgtcgaaaaacttagaatctctttgttgatcaatggagacatcaaatgtttggtgatgattcg |
40203401 |
T |
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| Q |
117 |
tgctaccattcttttcaaccatctttgttatggtaaaagactaattaacccaagttaggtttataatcttgactaaattttcagtgaacaatggggagta |
216 |
Q |
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| T |
40203400 |
tgctaccattcttttcaaccatctttgttatgataaaagactaattaacccaagttaggtttataatcttgactaaatttttagtgaacaatggggagta |
40203301 |
T |
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| Q |
217 |
tgtatttagaagaaaggttctaatttaaatatttggacaaatgacaaagaagggtacagctcagagatgtaggtaataatgta |
299 |
Q |
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| T |
40203300 |
tgtatttgaaagaaaggttctaatttaaatatttggacaagtgacaaagaagggtacagctcagagatgtaggtaataatgta |
40203218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 40207679 - 40207517
Alignment:
| Q |
20 |
acttaattaccggttcgtttgacacgaccatcgtcgtcgaaaaacttagaatctctttgttgatcaatggagatatcaaatgtttggtgatgattcgtgc |
119 |
Q |
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| T |
40207679 |
acttaattaccggttcttttgacgcgaccatcatcgtcgaagtacttagaatctctttgttgatcaatggagacatcaaatgtttggtgatgattcgtgc |
40207580 |
T |
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| Q |
120 |
taccattcttttcaaccatctttgttatggtaaaagactaattaacccaagttaggtttataa |
182 |
Q |
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| T |
40207579 |
taccattcttgtcaaccatctttgttatgataaaagactaatcaaccagagttaggtttataa |
40207517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 40199346 - 40199191
Alignment:
| Q |
20 |
acttaattaccggttcgtttgacacgaccatcgtcgtcgaaaaacttagaatctctttgttgatcaatggagatatcaaatgtttggtgatgattcgtgc |
119 |
Q |
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| T |
40199346 |
acttaattacctgttcttttgatgcgaccatcatcgtcgaagtacttggaatctctttgttggtcaatggagacatcaaatgtttggtgatgattcttgc |
40199247 |
T |
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| Q |
120 |
taccattcttttcaaccatctttgttatggtaaaagactaattaacccaagttagg |
175 |
Q |
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| T |
40199246 |
ttccgttcttttcaaccatctttgttatgacaaaggactaattaacccaggttagg |
40199191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 40207465 - 40207379
Alignment:
| Q |
200 |
gtgaacaatggggagtatgtatttagaagaaaggttctaatttaaatatttggacaaatgacaaagaagggtacagctcagagatgta |
287 |
Q |
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| T |
40207465 |
gtgaacaatggggagtatgtact-agaagaaaggttctaatataaatatttggaaaagtggcaaagaagggtacagctcagagatgta |
40207379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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