View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5134-Insertion-1 (Length: 940)

Name: NF5134-Insertion-1
Description: NF5134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5134-Insertion-1
NF5134-Insertion-1
[»] chr6 (6 HSPs)
chr6 (8-479)||(33031824-33032294)
chr6 (628-888)||(33031431-33031704)
chr6 (368-462)||(33050393-33050487)
chr6 (228-317)||(33050636-33050725)
chr6 (17-116)||(33032457-33032557)
chr6 (17-110)||(33050800-33050894)
[»] chr1 (4 HSPs)
chr1 (10-136)||(38903496-38903622)
chr1 (17-116)||(38903874-38903974)
chr1 (17-116)||(38904210-38904310)
chr1 (364-477)||(38903186-38903300)
[»] chr8 (3 HSPs)
chr8 (15-134)||(43521990-43522109)
chr8 (367-442)||(43521213-43521286)
chr8 (77-116)||(43522199-43522238)
[»] chr4 (2 HSPs)
chr4 (15-116)||(53017178-53017279)
chr4 (15-134)||(53017375-53017497)


Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 479
Target Start/End: Complemental strand, 33032294 - 33031824
Alignment:
Q  8 ttacattgtctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032294 ttacattgtctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaa 33032195  T
Q  108 acaagccttcaagatatcatcatagacaagaatattcatatcacattcactagatcataaccaaattaacctaggaagtacacaagaaaataaataaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032194 acaagccttcaagatatcatcatagacaagaatattcatatcacattcactagatcataaccaaattaacctaggaagtacacaagaaaataaataaaaa 33032095  T
Q  208 taagtgaaaatttagtataaatttggcctcattgagaagattagattagtctacatgttaaacttcagacatatgcttgtctattataaatatttaaatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032094 taagtgaaaatttagtataaatttggcctcattgagaagattagattagtctacatgttaaacttcagacatatgcttgtctattataaatatttaaatc 33031995  T
Q  308 attggccaaacttaattaacaaaatcaacaagattgaaatnnnnnnnnnnnnnnttaaaggactcagaatatgggtggtgatataacagaatggtcggca 407  Q
    ||||||||||||||||||||||||| ||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||    
T  33031994 attggccaaacttaattaacaaaataaacaagattgaaat-aaaaataagaaaattaaaggactcagaatatgggtggtgatataacagaatggtcggca 33031896  T
Q  408 aggtaaaaatttaccattacgacgaacgagacctatcacagtattcatcaatgtccaattcatgtttcagtt 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33031895 aggtaaaaatttaccattacgacgaacgagacctatcacagtattcatcaatgtccaattcatgtttcagtt 33031824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 628 - 888
Target Start/End: Complemental strand, 33031704 - 33031431
Alignment:
Q  628 tatcatataatagatgataataatatgagaggatcaaacaccatagttaagaatgaattgaaattgagaatgtgagggtttatttttatagagtggaatt 727  Q
    ||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33031704 tatcatataatagatgataata---tgagaggatcaaacaccatggttaagaatgaattgaaattgagaatgtgagggtttatttttatagagttgaatt 33031608  T
Q  728 tagggttttgt---------------ggtgcgccgcgaatggat----ttcaagagtatagtaaccggggttgagtttggcccaagaggcttctcatatg 808  Q
    |||||||||||               ||||||||| ||||| ||    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33031607 tagggttttgtctagaatgttcatagggtgcgccgtgaatgaatgcatttcaagagtatagtaaccggg-ttgagtttggcccaagaggcttctcatatg 33031509  T
Q  809 tcagcttagtattttcatttttactattccccacttctcaaattgctcaaaaattatcttagcgatattaaaagtgtaga 888  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33031508 tcagcttagtattt-catttttactattccc-acttctcaaattgctcaaaaattatcttagcgatattaaaagtgtaga 33031431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 33050487 - 33050393
Alignment:
Q  368 gactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaatttaccattacgacgaacgagacctatcacagtattcatcaatgtc 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  33050487 gactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaatttaccattacgacgaacgagacctgtcacagtattcatcagtgtc 33050393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 33050725 - 33050636
Alignment:
Q  228 atttggcctcattgagaagattagattagtctacatgttaaacttcagacatatgcttgtctattataaatatttaaatcattggccaaa 317  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  33050725 atttggccttattgagaagattagattagtctacatgttaaacttcagacatatgcttgtcttttttaaatattttaatcattggccaaa 33050636  T

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Target: chr6; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 33032557 - 33032457
Alignment:
Q  17 ctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaa-ggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 115  Q
    |||||||||||||||||||||| | |||||| |||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  33032557 ctcagacatccaaggaaggatacagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 33032458  T
Q  116 t 116  Q
    |    
T  33032457 t 33032457  T

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Target: chr6; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 33050894 - 33050800
Alignment:
Q  17 ctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaa-ggcgaaagttcttaggcggccactgcgaatgttttgagaaaca 110  Q
    ||||| |||||||||||||||| | |||||| |||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  33050894 ctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaaca 33050800  T

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Target: chr1 (Bit Score: 111; Significance: 2e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 38903622 - 38903496
Alignment:
Q  10 acattgtctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaaac 109  Q
    |||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38903622 acattgtctcagacatccaaggaaggataaaacagcactagctctcaagcctggcgaaggcgaaagctcttaggcggccactgcgaatgttttgagaaac 38903523  T
Q  110 aagccttcaagatatcatcatagacaa 136  Q
    |||||||||||||||||||||||||||    
T  38903522 aagccttcaagatatcatcatagacaa 38903496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 38903974 - 38903874
Alignment:
Q  17 ctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaa-ggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 115  Q
    |||||||||||||||||||| | | |||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38903974 ctcagacatccaaggaaggaaatagcagcattaactctcaagcccggcgaaaggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 38903875  T
Q  116 t 116  Q
    |    
T  38903874 t 38903874  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 38904310 - 38904210
Alignment:
Q  17 ctcagacatccaaggaaggataa-aacagcataaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 115  Q
    |||||||||||||||||||| |  ||| |||| | ||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||    
T  38904310 ctcagacatccaaggaaggaaagtaactgcattagctctcaagcctggcgaaggcgaaagctattaggcagccactgcgaatgttttgagaaacaagcct 38904211  T
Q  116 t 116  Q
    |    
T  38904210 t 38904210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 364 - 477
Target Start/End: Complemental strand, 38903300 - 38903186
Alignment:
Q  364 aaaggactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaatttacc-attacgacgaacgagacctatcacagtattcatcaatgtc 462  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||  |||   ||| |||||||||||||||||||||||||| | || |||  |||    
T  38903300 aaaggactcagaatatgggtggtgatataacaggatggtcggcaaggtcgaaaaagaccaattacgacgaacgagacctatcacagaaatcttcacagtc 38903201  T
Q  463 caattcatgtttcag 477  Q
    |||||  ||||||||    
T  38903200 caatttgtgtttcag 38903186  T

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Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 43522109 - 43521990
Alignment:
Q  15 gtctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcc 114  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43522109 gtctcagacatccaaggaaggataaagcagcattaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcc 43522010  T
Q  115 ttcaagatatcatcatagac 134  Q
    || | | |||||||| ||||    
T  43522009 ttaatgttatcatcacagac 43521990  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 43521286 - 43521213
Alignment:
Q  367 ggactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaatttaccattacgacgaacgagaccta 442  Q
    |||||||||||||||||||||||||||||| |||||||||||||    ||||  ||||||||||||||||||||||    
T  43521286 ggactcagaatatgggtggtgatataacaggatggtcggcaagg--ccaattggccattacgacgaacgagaccta 43521213  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 43522238 - 43522199
Alignment:
Q  77 tcttaggcggccactgcgaatgttttgagaaacaagcctt 116  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  43522238 tcttaggcggccaatgcgaatgttttgagaaacaagcctt 43522199  T

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Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 53017178 - 53017279
Alignment:
Q  15 gtctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcc 114  Q
    |||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53017178 gtctcagacatccaaggaaggataaagcagcactagctctcaagcctggcgaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcc 53017277  T
Q  115 tt 116  Q
    ||    
T  53017278 tt 53017279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 53017375 - 53017497
Alignment:
Q  15 gtctcagacatccaaggaaggataaaa---cagcataaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaaacaa 111  Q
    |||||||||||||||||||||| ||||   |||||| | ||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  53017375 gtctcagacatccaaggaaggaaaaaaaaacagcattagctctcaagcctggcgaaggcgaaagctcttggtcggccactgcgaatgttttgagaaacaa 53017474  T
Q  112 gccttcaagatatcatcatagac 134  Q
    ||||| |  ||||||||| ||||    
T  53017475 gccttaataatatcatcacagac 53017497  T

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