View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5134-Insertion-2 (Length: 890)
Name: NF5134-Insertion-2
Description: NF5134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5134-Insertion-2 |
 | |
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| [»] chr7 (2 HSPs) |
| |
|
| [»] scaffold0103 (1 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
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Alignment Details
Target: chr4 (Bit Score: 594; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 8 - 664
Target Start/End: Original strand, 38155044 - 38155701
Alignment:
| Q |
8 |
ccaatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgccaagaagtacgaaaagagtgatttga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
38155044 |
ccaatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgccaagtagcacgaaaagagtgatttga |
38155143 |
T |
|
| Q |
108 |
ggaatagggagtcccaatctgaaagagttatatatgaaacaagacgcaactggtacccaaacaattggaaccacccaccaaacagtgtgtgtgaaaaact |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38155144 |
ggaatagggagtcccaatctgaaagagttatatatgaaataagatgcaactggtacccaaacaattggaaccacccaccaaacagtgcgtgtgaaaaact |
38155243 |
T |
|
| Q |
208 |
gttccaacaaaaaattcttaattaattttgatacattaaaatgaatgaatgatatgaaaaatgtaatgtagctagggttatataggtacctccaagaaac |
307 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
38155244 |
gttccaacaaaaaattctcaattaattttgatacattaaaatgaatgaatgatatgaaaaatgtaatgtatttagggttatataggtacctccaagaaac |
38155343 |
T |
|
| Q |
308 |
tgctatgaaagaaacgagggctttccttgctcataataggttggtgaacccattcttcataagcttcaccaagataaccaacctgtcacatattgttgta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38155344 |
tgctatgaaagaaacgagggctttccttgctcataataggttggtgaacccattcttcataagcttcaccaagataaccaacctgtcacatagtgttgta |
38155443 |
T |
|
| Q |
408 |
aaattaaattgtgatggtgcagtgatt-aaaaaagttgaggataaataaaaatgtaataatttgagtttacttggaaaacaaggggcttattcaaatcaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38155444 |
aaattaaattgtgatggtgcagtgattaaaaaaagttgaggataaataaaaatgtaataatttgagtttacttggaaaacaaggggcttattcaaatcaa |
38155543 |
T |
|
| Q |
507 |
caacaaatttctctgcaaccatcttgaaggtgaagacaaactttagaaatgtaaggcagtagcatacacacttctatagtgatattcttgaagaggtaat |
606 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
38155544 |
caacaaatttctctgcaaccatcttgaaagtgaagacaaactttagaaatgtaaggcagtagcatacacacttctatagtgataattttgaagaggtaat |
38155643 |
T |
|
| Q |
607 |
gtgatgcctatttatcagtagcacacacacttttatacaataaaagtcattaactcat |
664 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38155644 |
gtcatgcctatttatcagtagcatacacacttttatacaataaaagtcattaactcat |
38155701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 38163840 - 38164049
Alignment:
| Q |
8 |
ccaatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgccaagaagtacgaaaagagtgatttga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| || ||| |
|
|
| T |
38163840 |
ccaatagctcttagtttgaacatggaaaagaaaacggtgcaacaagtattcggtcaatgtccatacaaaaatgccgagaagcacgaaaagagggaggtga |
38163939 |
T |
|
| Q |
108 |
ggaatagggagtcccaatctgaaagagttatatatgaaacaagacgcaactggtacccaaacaattggaaccacccaccaaacagtgtgtgtgaaaaact |
207 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||||||||||| |||| ||| | ||||| |||||||| |||||||||| |||| | ||||||| || |
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|
| T |
38163940 |
ggaacagggagtcccaatctgaaagagctataaatgaaacaagatgcaattggaatccaaataattggaatcacccaccaagcagttcgcgtgaaaacct |
38164039 |
T |
|
| Q |
208 |
gttccaacaa |
217 |
Q |
| |
|
|||||||||| |
|
|
| T |
38164040 |
gttccaacaa |
38164049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 265 - 406
Target Start/End: Original strand, 38164193 - 38164334
Alignment:
| Q |
265 |
aaaatgtaatgtagctagggttatataggtacctccaagaaactgctatgaaagaaacgagggctttccttgctcataataggttggtgaacccattctt |
364 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||| |||||||||| | |
|
|
| T |
38164193 |
aaaatttaatgtaggtagggtagggtaggtacctccaagatattgctatgaaagaaacgagggccttccttgcccataataggttgatgaacccatttat |
38164292 |
T |
|
| Q |
365 |
cataagcttcaccaagataaccaacctgtcacatattgttgt |
406 |
Q |
| |
|
||||| |||||||||||| |||||||||||| ||| |||||| |
|
|
| T |
38164293 |
cataatcttcaccaagatgaccaacctgtcatatagtgttgt |
38164334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 528
Target Start/End: Original strand, 38164558 - 38164612
Alignment:
| Q |
474 |
ttacttggaaaacaaggggcttattcaaatcaacaacaaatttctctgcaaccat |
528 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
38164558 |
ttacctggcaaacaaggggtttattcaaatcaacaacaaatttgtttgcaaccat |
38164612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 798 - 839
Target Start/End: Complemental strand, 27897423 - 27897382
Alignment:
| Q |
798 |
ttcccactacttcatcacttcattcatattgttcacttgagt |
839 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
27897423 |
ttcccactacttcataacttcattcatatggttcaattgagt |
27897382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 663 - 890
Target Start/End: Original strand, 12807722 - 12807946
Alignment:
| Q |
663 |
atctacttaactatatagaacaattgttgtctgnnnnnnngactattttgcccttaggagggtattttggtaaattagtaaatcataactttcacnnnnn |
762 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12807722 |
atctacttaactatatagaacaattgttgtctgtttttttgactattttgcccttaggagggtattttggtaaattagtaaatcatgcctttcaccttta |
12807821 |
T |
|
| Q |
763 |
nnnnnnnnngtagctgtacgatttcaattcatttgttcccactacttcatcacttcattcatattgttcacttgagtccggttccctttcctctcaccat |
862 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12807822 |
tatatat--gtagttgtactatttcaattcatttgttcccactacttcatcacttcattcatattgttcacttgagtccggttccctttcctctcaccat |
12807919 |
T |
|
| Q |
863 |
accttttctgtgtccggttcattgttct |
890 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
12807920 |
acc-tttctgtgtccggttcattgttct |
12807946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 27841513 - 27841584
Alignment:
| Q |
10 |
aatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgc |
81 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||| |||| ||||||| |||||| ||||||| |
|
|
| T |
27841513 |
aataggtcttagtttgaacatggaaagggagacggtgcaacaattatttgaccaatttccatatgaaaatgc |
27841584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 134; Significance: 3e-69; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 670 - 890
Target Start/End: Original strand, 5152 - 5371
Alignment:
| Q |
670 |
taactatatagaacaattgttgtctgnnnnnnngactattttgcccttaggagggtattttggtaaattagtaaatcataactttcacnnnnnnnnnnnn |
769 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5152 |
taactatatagaacaattgttgtctgtttttttgactattttgcccttagaagggtattttggtaaattagtaaatcatgcctttcacctatatatatat |
5251 |
T |
|
| Q |
770 |
nngtagctgtacgatttcaattcatttgttcccactacttcatcacttcattcatattgttcacttgagtccggttccctttcctctcaccatacctttt |
869 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5252 |
atgtagttgtacgatttcaattcatttgttcccactacttcatcacttcattcatattgttcacttgagtccggttccctttcctctcaccatacc-ttt |
5350 |
T |
|
| Q |
870 |
ctgtgtccggttcattgttct |
890 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5351 |
ctgtgtccggttcattgttct |
5371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 3e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 670 - 890
Target Start/End: Complemental strand, 2634857 - 2634638
Alignment:
| Q |
670 |
taactatatagaacaattgttgtctgnnnnnnngactattttgcccttaggagggtattttggtaaattagtaaatcataactttcacnnnnnnnnnnnn |
769 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2634857 |
taactatatagaacaattgttgtctgtttttttgactattttgcccttagaagggtattttggtaaattagtaaatcatgcctttcacctatatatatat |
2634758 |
T |
|
| Q |
770 |
nngtagctgtacgatttcaattcatttgttcccactacttcatcacttcattcatattgttcacttgagtccggttccctttcctctcaccatacctttt |
869 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2634757 |
atgtagttgtacgatttcaattcatttgttcccactacttcatcacttcattcatattgttcacttgagtccggttccctttcctctcaccatacc-ttt |
2634659 |
T |
|
| Q |
870 |
ctgtgtccggttcattgttct |
890 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2634658 |
ctgtgtccggttcattgttct |
2634638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 790 - 890
Target Start/End: Complemental strand, 12084427 - 12084328
Alignment:
| Q |
790 |
ttcatttgttcccactacttcatcacttcattcatattgttcacttgagtccggttccctttcctctcaccataccttttctgtgtccggttcattgttc |
889 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||| ||||| | || | |||||| ||||| |||||||||| |
|
|
| T |
12084427 |
ttcagttgttcccactacttcataacttcattgatatcgttcacttgagtccggttccgtttcatctcatcctaac-tttctgggtccgcttcattgttc |
12084329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 2741150 - 2741088
Alignment:
| Q |
10 |
aatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccata |
72 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||| |||| ||||||| |||||| |
|
|
| T |
2741150 |
aataggtcttagtttgaacatggaaagggatacggtgcaacaattatttgaccaatttccata |
2741088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 48189377 - 48189306
Alignment:
| Q |
10 |
aatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgc |
81 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |||| |||| ||||||| |||||| ||||||| |
|
|
| T |
48189377 |
aatagatcttagtttgaacatggaaagggaaacggtgccacaattatttgaccaatttccataagaaaatgc |
48189306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 532
Target Start/End: Complemental strand, 11770434 - 11770381
Alignment:
| Q |
479 |
tggaaaacaaggggcttattcaaatcaacaacaaatttctctgcaaccatcttg |
532 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||| |||||||||||| |
|
|
| T |
11770434 |
tggaaaacaaggggcttatccaaatcaactacaaagttctgggcaaccatcttg |
11770381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 11770701 - 11770623
Alignment:
| Q |
313 |
tgaaagaaacgagggctttccttgctcataataggttggtgaacccattcttcataagcttcaccaagataaccaacct |
391 |
Q |
| |
|
||||||||||| || | ||||||||| | ||| || || |||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
11770701 |
tgaaagaaacggggaccttccttgctaacaatgggctgatgaacccactcttcataagcctcaccaagatgtccaacct |
11770623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 707 - 745
Target Start/End: Complemental strand, 27015428 - 27015390
Alignment:
| Q |
707 |
attttgcccttaggagggtattttggtaaattagtaaat |
745 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
27015428 |
attttgcccttatgggggtattttggtaaattagtaaat |
27015390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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