View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5134_high_1 (Length: 460)
Name: NF5134_high_1
Description: NF5134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5134_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 35 - 450
Target Start/End: Complemental strand, 49770886 - 49770471
Alignment:
| Q |
35 |
gtgtttacctgccacatcttgaaaatatagacaaacgaattccttttcataagtaagagttctcttgatacacaggcttttaagagttctttcctgctca |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49770886 |
gtgtttacctgccacatcttgaaaatatagacaaacgaattccttttcataagtaagagttctcttgatacgcaggcttttaagagttctttcctgctca |
49770787 |
T |
|
| Q |
135 |
caccatacttgtttttggttaaaacggcagggtggcctttggaggcatcaaatggagtaccaagttcatcaccgagtttttgaccgacatgaaacaactg |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49770786 |
caccatacttgtttttggttaaaacggcagggtggcctttggaggcatcaaatggagtaccaagttcatcaccgagtttttgaccgacatgaaacaactg |
49770687 |
T |
|
| Q |
235 |
aaattcttcagcgaattctctaacagtgataaaggtatatggcttatctttatttgaccagtactgttcttgatcttttcttgaagttacctgtcatata |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49770686 |
aaattcttcagcgaattctctaacagtgataaaggtatatggcttatctttatttgaccagtactgttcttgatcttttcttgaagttacctgtcatata |
49770587 |
T |
|
| Q |
335 |
aagagatgagtatagtgtcttctattaaaggtgaaaagtgcaaaacaagtcatagagtctaatgaagctaagaaaaagtacttcttgtaaaaaatctgct |
434 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49770586 |
aagagataagtatagtgtcttctattaaaggtgaaaagtgcaaaacaagtcatagagtctaatgaagctaagaaaaagtacttcttgtaaaaaatctgct |
49770487 |
T |
|
| Q |
435 |
actcctttcctctctg |
450 |
Q |
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|||||||||||||||| |
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| T |
49770486 |
actcctttcctctctg |
49770471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 121 - 313
Target Start/End: Original strand, 3825833 - 3826021
Alignment:
| Q |
121 |
ttctttcctgctcacaccatacttgtttttggttaaaacggcagggtggcctttggaggcatcaaatggagtaccaagttcatcaccgagtttttgaccg |
220 |
Q |
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||||||| ||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||||| ||| |||||| || |||||||| |||| |
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| T |
3825833 |
ttctttcttgctcacaccatacttg-ttttggttaaaac----aggtggcctctggaggtatcaaatggtgtagcaagtttgtcctcgagttttcgacca |
3825927 |
T |
|
| Q |
221 |
acatgaaacaactgaaattcttcagcgaattctctaacagtgataaaggtatatggcttatctttatttgaccagtactgttct-tgatctttt |
313 |
Q |
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| |||||||||||||| ||||| | |||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||||| |
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| T |
3825928 |
atttgaaacaactgaaaagcttcatcaaattctctgacagtgataaagggatatggcccatctttatttgaccaatactgttctctgatctttt |
3826021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 3828015 - 3828170
Alignment:
| Q |
34 |
agtgtttacctgccacatcttgaaaatatagacaaacgaattccttttcataagtaagagttctcttgatacacaggcttttaagagttctttcctgctc |
133 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||| | || |||||||||||||||||| ||||||| || |||||||||||||| |||| |
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| T |
3828015 |
agtgcttacctgccacatcttgaaa-tatagacaa-caaaatccttttcataagtaagat--------atacaca--ctcttaagagttctttcttgctt |
3828102 |
T |
|
| Q |
134 |
acaccatacttgtttttggttaaaacggcagggtggcctttggaggcatcaaatggagtaccaagttcatc |
204 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||| || |||||| ||| |||||||| |||||||||| |
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| T |
3828103 |
acaccatacttg-ttttggttaaaacagcagggtgacc--tggaggtatcgaatggagtggcaagttcatc |
3828170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 3825794 - 3825829
Alignment:
| Q |
55 |
gaaaatatagacaaacgaattccttttcataagtaa |
90 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
3825794 |
gaaaatatagacaaacgagttccttttcataagtaa |
3825829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 43460065 - 43460106
Alignment:
| Q |
287 |
tttgaccagtactgttcttgatcttttcttgaagttacctgt |
328 |
Q |
| |
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||||||||||| |||||||||||||| |||||||| |||||| |
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| T |
43460065 |
tttgaccagtattgttcttgatctttccttgaagtaacctgt |
43460106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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