View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5134_low_2 (Length: 399)
Name: NF5134_low_2
Description: NF5134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5134_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 202 - 390
Target Start/End: Original strand, 37407359 - 37407547
Alignment:
| Q |
202 |
acgtaggtttttggtggaaagggaatgaatggtgttctgacttatctattcacaaaaacaattagagaataccctcgtggaattacttatagaggtctac |
301 |
Q |
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| T |
37407359 |
acgtaggtttttggtggaaagggaatgaatggtgttctgacttatctattcacaaaaacaattagagaataccctcgtggaattacttatagaggtctac |
37407458 |
T |
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| Q |
302 |
tggcaaaaatgcatgaagaaattnnnnnnnttaacagaaacagatcattcagttaccgcatcttgcaccttaaaattatcgcacaggtt |
390 |
Q |
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| T |
37407459 |
tggcaaaaatgcatgaagaaattaaaaaaattaacagaaacagatcattcagttaccgcatcttgcaccgtaaaattatcgcacaggtt |
37407547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 37407185 - 37407306
Alignment:
| Q |
19 |
tagagaccctataagaaaacatacaagtggtggattggctatttgtctcagtgcttgtgaggataaccaaatggctgctgatagtgcagtaagaataaat |
118 |
Q |
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| T |
37407185 |
tagagaccctataagaaaacatacaagtggtggattggctatttgtctcagtgcttgtgaggataaccaaatggctgctgatagtgcagtaagaataaat |
37407284 |
T |
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| Q |
119 |
gaatcttgttgtttaattttct |
140 |
Q |
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| T |
37407285 |
taatcttgttgtttaattttct |
37407306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 1719593 - 1719512
Alignment:
| Q |
35 |
aaacatacaagtggtggattggctatttgtctcagtgcttgtgaggataaccaaatggctgctgatagtgcagtaagaataa |
116 |
Q |
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| T |
1719593 |
aaacgtacaaatggtggagtggccatttgcttcagtgcttgtgaagattgtcagatggctgccgatactgcagtaagaataa |
1719512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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