View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5134_low_3 (Length: 319)
Name: NF5134_low_3
Description: NF5134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5134_low_3 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 330247 - 329946
Alignment:
| Q |
13 |
catcaaataccttcacaaacttgttcacttttatctccaattcctttgctgcatcatttttcacttcatcagaagcaacaagaagataatcaacagcatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
330247 |
catcaaataccttcacaaacttgttcacttttatctccaattccttagctgcatcatttttcacttcatcagaagcaacaagaagataatcaacagcatc |
330148 |
T |
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| Q |
113 |
atttacatcctttatctccttcaagatcaattttttctcatctaattcttcactaattttagaatcaagtgtgaaaattgaagaaccatcaaacccatct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
330147 |
atttacatcctttatctccttcaagatcaattttttctcatctaacccttcactgattttagaatcaagtgtgaaaattgaagaaccatcaaacccatct |
330048 |
T |
|
| Q |
213 |
accattttcttaacctcattatatagcttaacatcattacacaaaccagacaataagattccacaaacccagaaaccaattatcttcatttcattcacag |
312 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
330047 |
accattttcttaacctcaatatatggcttaacatcattacacaaaccagacaataagattccacaaacccagaaaccaattatcttcatttcattcacag |
329948 |
T |
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| Q |
313 |
ct |
314 |
Q |
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|| |
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| T |
329947 |
ct |
329946 |
T |
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