View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5134_low_4 (Length: 255)
Name: NF5134_low_4
Description: NF5134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5134_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 27354855 - 27355036
Alignment:
| Q |
18 |
gttgacagccttgtccaattcagtaccagggttactcgccaaaggtcctactaaagaatcacgaaaagatagagttagaagaaaaccattacactccgat |
117 |
Q |
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| T |
27354855 |
gttgacggccttgtccaattcagtaccagggttactcgccaaaggtcctactaaagaatcacgaaaagatagaattagaagaaaaccattacactccgat |
27354954 |
T |
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| Q |
118 |
ccaaatgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacgtttcaacgttggatcttgacattttttg |
199 |
Q |
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| T |
27354955 |
ccaaatgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacgtttcaacgttggatcttgacattttttg |
27355036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 42996091 - 42996261
Alignment:
| Q |
18 |
gttgacagccttgtccaattcagtaccagggttactcgccaaaggtcctactaaagaatcacgaaaagatagagttagaagaaaaccattacactccgat |
117 |
Q |
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| T |
42996091 |
gttgacggacttgtccaattcagtaccagggttactcgccaaaggtcctactaaagaatcacgaaaagataaagttagaagaaaaccactacactccgat |
42996190 |
T |
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| Q |
118 |
ccaaatgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacgtttcaacgttggatcttg |
189 |
Q |
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| T |
42996191 |
cc-aatgaaagttaaacttgtttttaccggtaagtgcatggtaggacaacaacgtttcaacgttggatcttg |
42996261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 42998332 - 42998391
Alignment:
| Q |
183 |
gatcttgacattttttgttgatcttagcaatttacggtgaattccaacaactaggatgat |
242 |
Q |
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| T |
42998332 |
gatcttgacattttttgttgatcttaacaatttacagtgaattccaacaaccagaatgat |
42998391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 50232531 - 50232597
Alignment:
| Q |
18 |
gttgacagccttgtccaattcagtaccagggttactcgccaaaggtcctactaaagaatcacgaaaa |
84 |
Q |
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| T |
50232531 |
gttgacagctttgtccaattcagtagcagggttactcaccaaagatccaactaaagaaacacgaaaa |
50232597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 42998925 - 42998984
Alignment:
| Q |
183 |
gatcttgacattttttgttgatcttagcaatttacggtgaattccaacaactaggatgat |
242 |
Q |
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| T |
42998925 |
gatcttgacattttttgttgatcttaacaatttatagtgaattccaacaaccagaatgat |
42998984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 21005745 - 21005829
Alignment:
| Q |
18 |
gttgacagccttgtccaattcagtaccagggttactcgccaaaggtcctactaaagaatcacgaaaagatagagttagaagaaaa |
102 |
Q |
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| T |
21005745 |
gttgacagctttgtccaattcagtagcagggttactcaccaaagatccaactaaagaaacacgaaaaagaaaagttagaagaaaa |
21005829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 16981626 - 16981510
Alignment:
| Q |
25 |
gccttgtccaattcagtaccagggttactcgccaaaggtcctactaaagaatcacgaaaagatagagttagaagaaaaccattacactccgatccaaatg |
124 |
Q |
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|||||||||||||||||| ||||||| | | ||||||||||||||||| | |||| ||| | ||| |||| |||||| |||| | || ||| ||||| |
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| T |
16981626 |
gccttgtccaattcagtaacagggttgcacaccaaaggtcctactaaaataacacgtaaaaactgagatagaggaaaacaattatattcgaatcaaaatg |
16981527 |
T |
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| Q |
125 |
aaagctaaacttgtttt |
141 |
Q |
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| T |
16981526 |
aaagcaaaacttgtttt |
16981510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 16981509 - 16981455
Alignment:
| Q |
122 |
atgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacgtttcaa |
177 |
Q |
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| T |
16981509 |
atgaaagctaaacttgtttt-accagttagtgcatggtaggacaacaacgtttcaa |
16981455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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