View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5134_low_5 (Length: 251)

Name: NF5134_low_5
Description: NF5134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5134_low_5
NF5134_low_5
[»] chr8 (1 HSPs)
chr8 (15-251)||(11382384-11382620)
[»] chr5 (3 HSPs)
chr5 (101-143)||(14932228-14932270)
chr5 (104-138)||(11684364-11684398)
chr5 (102-142)||(11615447-11615487)
[»] chr4 (4 HSPs)
chr4 (104-140)||(17125723-17125759)
chr4 (104-143)||(23503500-23503539)
chr4 (108-136)||(4662350-4662378)
chr4 (94-142)||(6364081-6364128)
[»] scaffold0103 (1 HSPs)
scaffold0103 (104-143)||(51509-51548)
[»] chr6 (3 HSPs)
chr6 (104-143)||(33911371-33911410)
chr6 (104-140)||(10452453-10452489)
chr6 (104-140)||(20370840-20370876)
[»] chr7 (2 HSPs)
chr7 (104-142)||(30496645-30496683)
chr7 (102-142)||(28178908-28178948)
[»] chr3 (2 HSPs)
chr3 (104-142)||(3757989-3758027)
chr3 (106-142)||(34318031-34318067)
[»] chr2 (4 HSPs)
chr2 (104-142)||(3102634-3102672)
chr2 (104-142)||(5045248-5045286)
chr2 (103-140)||(44216859-44216896)
chr2 (107-143)||(5998792-5998828)
[»] chr1 (1 HSPs)
chr1 (102-142)||(6933052-6933092)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 11382620 - 11382384
Alignment:
Q  15 tatggtcaataatttgatgtagatatgatatatgatttatagtaactgaccctagtactgtttggataaacaatataactaagcacttcatgtataatct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11382620 tatggtcaataatttgatgtagatatgatatatgatttatagtaactgaccctagtactgtttggataaacaatataactaagcacttcatgtataatct 11382521  T
Q  115 atttttataacaaaatataaaataaagtttgtaaggcctagtcaactgacaatgccgatattgctaggataaatatcgtcattctagtttgaaccgagtt 214  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11382520 atttttataacaaaatataaaataaagtttgtaaggtctagtcaactgacaatgccgatattgctaggatgaatatcgtcattctagtttgaaccgagtt 11382421  T
Q  215 ttcgcagttgtgtgtgtgagttttaggtggtgtttgc 251  Q
    |||||||||||||||||||||||||||||||||||||    
T  11382420 ttcgcagttgtgtgtgtgagttttaggtggtgtttgc 11382384  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 14932228 - 14932270
Alignment:
Q  101 ttcatgtataatctatttttataacaaaatataaaataaagtt 143  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  14932228 ttcatgtataatctatttttatagcaaaagataaaataaagtt 14932270  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 11684364 - 11684398
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaata 138  Q
    |||||||| ||||||||||||||||||||||||||    
T  11684364 atgtataagctatttttataacaaaatataaaata 11684398  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 11615447 - 11615487
Alignment:
Q  102 tcatgtataatctatttttataacaaaatataaaataaagt 142  Q
    |||| ||||| ||||||||||||||||| ||||||||||||    
T  11615447 tcatatataagctatttttataacaaaagataaaataaagt 11615487  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 17125759 - 17125723
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaataaa 140  Q
    |||||||| ||||||||||||||||||||||||||||    
T  17125759 atgtataagctatttttataacaaaatataaaataaa 17125723  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 23503500 - 23503539
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaataaagtt 143  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  23503500 atgtataatctaattctataacaaaatataaaataaagtt 23503539  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 4662378 - 4662350
Alignment:
Q  108 ataatctatttttataacaaaatataaaa 136  Q
    |||||||||||||||||||||||||||||    
T  4662378 ataatctatttttataacaaaatataaaa 4662350  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 6364081 - 6364128
Alignment:
Q  94 taagcacttcatgtataatctatttttataacaaaatataaaataaagt 142  Q
    ||||||||| |||||||| |||||| |||||||||| ||||||||||||    
T  6364081 taagcactt-atgtataagctatttctataacaaaagataaaataaagt 6364128  T

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Target: scaffold0103 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 51509 - 51548
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaataaagtt 143  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  51509 atgtataagttatttttataacaaaatataaaataaagtt 51548  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 33911410 - 33911371
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaataaagtt 143  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  33911410 atgtataatctatttttataacaaaagatcaaataaagtt 33911371  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 10452489 - 10452453
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaataaa 140  Q
    |||||||| |||||| |||||||||||||||||||||    
T  10452489 atgtataagctatttctataacaaaatataaaataaa 10452453  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 20370840 - 20370876
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaataaa 140  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  20370840 atgtataagctatttttataacaaaagataaaataaa 20370876  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 30496645 - 30496683
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaataaagt 142  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  30496645 atgtataaactatttctataacaaaatataaaataaagt 30496683  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 28178908 - 28178948
Alignment:
Q  102 tcatgtataatctatttttataacaaaatataaaataaagt 142  Q
    |||||||||| |||||| |||||||||| ||||||||||||    
T  28178908 tcatgtataagctatttctataacaaaagataaaataaagt 28178948  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 3757989 - 3758027
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaataaagt 142  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  3757989 atgtataagctatttttgtaacaaaatataaaataaagt 3758027  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 34318031 - 34318067
Alignment:
Q  106 gtataatctatttttataacaaaatataaaataaagt 142  Q
    |||||| |||||| |||||||||||||||||||||||    
T  34318031 gtataagctatttctataacaaaatataaaataaagt 34318067  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 3102634 - 3102672
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaataaagt 142  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  3102634 atgtataagctatttttatagcaaaatataaaataaagt 3102672  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 5045286 - 5045248
Alignment:
Q  104 atgtataatctatttttataacaaaatataaaataaagt 142  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  5045286 atgtataagctatttttataacaaaagataaaataaagt 5045248  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 44216859 - 44216896
Alignment:
Q  103 catgtataatctatttttataacaaaatataaaataaa 140  Q
    |||||||||  |||||||||||||||||||||||||||    
T  44216859 catgtataagttatttttataacaaaatataaaataaa 44216896  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 5998828 - 5998792
Alignment:
Q  107 tataatctatttttataacaaaatataaaataaagtt 143  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  5998828 tataagctatttttataacaaaagataaaataaagtt 5998792  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 6933092 - 6933052
Alignment:
Q  102 tcatgtataatctatttttataacaaaatataaaataaagt 142  Q
    |||||||||| | ||||||||||||||| ||||||||||||    
T  6933092 tcatgtataagccatttttataacaaaacataaaataaagt 6933052  T

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