View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5134_low_6 (Length: 243)
Name: NF5134_low_6
Description: NF5134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5134_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 11382358 - 11382145
Alignment:
| Q |
9 |
tgtcaaactattttcttgtaagttataaagtgttcttataaattatcttggagagcttatggaattaagttttttataaattatattgttttcaataagt |
108 |
Q |
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| T |
11382358 |
tgtcaaattatttttgtgtaagttataaagtgttcttataaattatcttggagagcttatggaattaagttttttataaatt-----gttttcaataagt |
11382264 |
T |
|
| Q |
109 |
tcatttgcctgacattgcaggagaatgacagatcttagatctaagaaagccatctatgtatgtgaacaagctccagcttcttgtcatatacagtttatct |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11382263 |
tcatttgcctgacattgcaggagaatgacagatcttagatctaagaaagccatctatgtatgtgaacaatctccagcttcttgtcatatacagtttatct |
11382164 |
T |
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| Q |
209 |
gcaaaggatatcttataca |
227 |
Q |
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||||||||||||||||||| |
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| T |
11382163 |
gcaaaggatatcttataca |
11382145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 29360126 - 29360228
Alignment:
| Q |
113 |
ttgcctgacattgcaggagaatgacagatcttagatctaagaaagccatctatgtatgtgaacaagctccagcttcttgtcatatacagtttatctgcaa |
212 |
Q |
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|||| |||||| ||||||||||| || || ||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
29360126 |
ttgcatgacataacaggagaatgatggacctcagatctaggaaagccatctacgtatgtgaacaagctccatcttcttgccatatacagtttatctgcaa |
29360225 |
T |
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| Q |
213 |
agg |
215 |
Q |
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||| |
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| T |
29360226 |
agg |
29360228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 18628635 - 18628568
Alignment:
| Q |
10 |
gtcaaactattttcttgtaagttataaagtgttcttataaattatcttggagagcttatggaattaag |
77 |
Q |
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|||||||| |||| | ||||||||||| |||| | |||| |||||||||||||||||||||| |||| |
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| T |
18628635 |
gtcaaactgtttttatataagttataaactgttttcataagttatcttggagagcttatggaaataag |
18628568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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