View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5134_low_8 (Length: 204)
Name: NF5134_low_8
Description: NF5134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5134_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 4631911 - 4631746
Alignment:
| Q |
21 |
aacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattat |
120 |
Q |
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| T |
4631911 |
aacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattat |
4631812 |
T |
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| Q |
121 |
tctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatg |
186 |
Q |
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| T |
4631811 |
tctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatg |
4631746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 4667907 - 4667749
Alignment:
| Q |
21 |
aacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattat |
120 |
Q |
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| T |
4667907 |
aacagctcatatgatgttttagctgtaaattgtggtcattccatagatactatctttgaaaatcgaacctgggttggggacaatgatgataccaaactct |
4667808 |
T |
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| Q |
121 |
tctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgat |
185 |
Q |
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| T |
4667807 |
tctctgtcattgaaccacaaa------tcatatctgtaaaagccaaagctaatcctaactctgat |
4667749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 18924874 - 18925029
Alignment:
| Q |
30 |
tatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatca |
129 |
Q |
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| T |
18924874 |
tatgataatttagccctgaattgtggccactccatagatacaacatttgaaaatcgaacctgggttggtgacatggatgacaccaaactattctctatca |
18924973 |
T |
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| Q |
130 |
ttgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgat |
185 |
Q |
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|||||||||| || ||| | | ||| ||||| ||||| | || |||||||||||| |
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| T |
18924974 |
ttgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgat |
18925029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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