View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5135-Insertion-1 (Length: 876)
Name: NF5135-Insertion-1
Description: NF5135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5135-Insertion-1 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 395 - 876
Target Start/End: Original strand, 47915925 - 47916406
Alignment:
| Q |
395 |
gtcaagaaataatatataattatagatatttatgtttctaacaactcttttttgaaagattgtttctaacaacttatttatttatcattatcgaacgata |
494 |
Q |
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| T |
47915925 |
gtcaagaaataatatataattatagatatttatgtttctaacaactcttttt-gaaaggttgtttctaacagcttatttatttatcattatcgaacgata |
47916023 |
T |
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| Q |
495 |
gaagaagcccgggttaatttgggttgaagggatggtaggtcttaagatccgacacaattccttcaattgatccaactgcagcaacaagagtgacaatcaa |
594 |
Q |
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| T |
47916024 |
gaagaagcctgggttaatttgggttgaagggatggtaggtcttaagatctgacacaattccttcaattgatccaactgcagcaacaagagtgacaatcaa |
47916123 |
T |
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| Q |
595 |
acaaaaaccacttagcaatttcatcccaatccatatagtagaatacttgggcacttgggcttgtgtcaagtacatctctgttggaaagtaaactgtcaag |
694 |
Q |
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| T |
47916124 |
acaaaaaccacttagcaatttcatcccaatccatatagtagaatacttgggcacttgggcttgtgtcaagtacatctctgttggaaagtacactgtcaag |
47916223 |
T |
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| Q |
695 |
ggaaagaacgatatggctcctagcaaacccacaacgttgttgaagaatggtaatatcatagcaatcaatgttgtgattatcacataaattgtcctccatg |
794 |
Q |
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| T |
47916224 |
ggaaagaacgatatggctcctagcaaacccacaacgttgttgaagaatggtaatatcatagcaatcaatgttgtgattatcacataaattgtcctccatg |
47916323 |
T |
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| Q |
795 |
tcaacctgaacatgttca-tctccatatgccaacaaatggaattcttacatcatatacttttgtcatcaatttgctttgtggc |
876 |
Q |
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| T |
47916324 |
tcaacctgaacatgttcattctccatatgccaacaaatggaattcttacatcatattcttttgtcatcaatttgctttgtggc |
47916406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 548 - 876
Target Start/End: Original strand, 47901383 - 47901712
Alignment:
| Q |
548 |
acaattccttcaattgatccaactgcagcaacaagagtgacaatcaaacaaaaaccacttagcaatttcatcccaatccatatagtagaatacttgggca |
647 |
Q |
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| T |
47901383 |
acaattccttcaattgatccaactgcagcaacaagagtgacaatcaaacaaaaccaacttagcaatttcattccaatccatatagaagaatatttgggca |
47901482 |
T |
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| Q |
648 |
cttgggcttgtgtcaagtacatctctgttggaaagtaaactgtcaagggaaagaacgatatggctcctagcaaacccacaacgttgttgaagaatggtaa |
747 |
Q |
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| T |
47901483 |
ctttggcttgtgtcaagtacatctctattggaaagtacactgtcaaaggaaagaatgaaatagctcctaacaaacccacaacgctgttgaagaatggaaa |
47901582 |
T |
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| Q |
748 |
tatcatagcaatcaatgttgtgattatcacataaattgtcctccatgtcaacctgaacatgttca-tctccatatgccaacaaatggaattcttacatca |
846 |
Q |
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| T |
47901583 |
tatcatagcaatcactgttgtgaatatcacatataatgtcctccatatcaccctgaacatgttcattctccatgtgccaaccaatggaatttttacataa |
47901682 |
T |
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| Q |
847 |
tatacttttgtcatcaatttgctttgtggc |
876 |
Q |
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| T |
47901683 |
tattcttgtgtcaccagtttgctttgtggc |
47901712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 551 - 876
Target Start/End: Original strand, 47922512 - 47922838
Alignment:
| Q |
551 |
attccttcaattgatccaactgcagcaacaagagtgacaatcaaacaaaaaccacttagcaatttcatcccaatccatatagtagaatacttgggcactt |
650 |
Q |
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| T |
47922512 |
attccttggattgatgcaacaacaccaacaagagtgacaatcaaacaaaatccacttagcagtttcatccttatccatatacaagaatacttgggtactc |
47922611 |
T |
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| Q |
651 |
gggcttgtgtcaagtacatctctgttggaaagtaaactgtcaagggaaagaacgatatggctcctagcaaacccacaacgttgttgaagaatggtaatat |
750 |
Q |
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| T |
47922612 |
tagcttgtttcaggtacatctctattggaaagtacacggtcaagggaaagaacgacatggctcctaacaaaccaacaatgttgttgaaaaatggaaatat |
47922711 |
T |
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| Q |
751 |
catagcaatcaatgttgtgattatcacataaattgtcctccatgtcaacctgaacatgttca-tctccatatgccaacaaatggaattcttacatcatat |
849 |
Q |
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| T |
47922712 |
catagcaatcaatgttgtaattatcacatataatgtcctccatatcaccctgaacatgttcattctccatgtgccaaccaatggaattcttacatcatat |
47922811 |
T |
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| Q |
850 |
acttttgtcatcaatttgctttgtggc |
876 |
Q |
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| T |
47922812 |
tcttgtgttatcaatttgctttgtggc |
47922838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 551 - 876
Target Start/End: Original strand, 47907630 - 47907956
Alignment:
| Q |
551 |
attccttcaattgatccaactgcagcaacaagagtgacaatcaaacaaaaaccacttagcaatttcatcccaatccatatagtagaatacttgggcactt |
650 |
Q |
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| T |
47907630 |
attcctacaattgatccaactgcagcaacaagagtgacaatcaagcaaaacccacttagaagtttcattccaatccatatagaagaatatttgggaacct |
47907729 |
T |
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| Q |
651 |
gggcttgtgtcaagtacatctctgttggaaagtaaactgtcaagggaaagaacgatatggctcctagcaaacccacaacgttgttgaagaatggtaatat |
750 |
Q |
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| T |
47907730 |
tagcttgtttcagatacatttctgttggaaagtacactgtcaatggaaaaaaggatatggctcctagcaatcccacaatgctattgaagaatggtaatat |
47907829 |
T |
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| Q |
751 |
catagcaatcaatgttgtgattatcacataaattgtcctccatgtcaacctgaacatgttca-tctccatatgccaacaaatggaattcttacatcatat |
849 |
Q |
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| T |
47907830 |
gatagcaatcactgtcgtgaatatcacatacattgtcctccaaattaacctaaacatattcattctccatatgccaactaatggaatgtttacatgatat |
47907929 |
T |
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| Q |
850 |
acttttgtcatcaatttgctttgtggc |
876 |
Q |
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| T |
47907930 |
tcttttgtcataaatttgctttgtggc |
47907956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 47915510 - 47915670
Alignment:
| Q |
7 |
agtcatgtggtgtttcaatattagaagttatgacgttccaatcaagtcatcgatgcaacccaagatttaaaacttacatggaagtatattttcgtctctt |
106 |
Q |
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| T |
47915510 |
agtcatgtggtgtttcaatattagaagttatgacgttccaatcaagtcatcgatgcaacccaagatttaaaacttacatggaagtatattttcgtctctt |
47915609 |
T |
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| Q |
107 |
cacattctctttaagacatgcatgacgctttcagagcagtcaccgtatataggacatagat |
167 |
Q |
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| T |
47915610 |
cacagtctctttaagacatgcatgacgcttccagagcagtcaccgtatataggacatagat |
47915670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 226 - 347
Target Start/End: Original strand, 47915756 - 47915877
Alignment:
| Q |
226 |
ttgtacaaatatttgagagagaatttttcgttttcggcgagattttaactagaaaatccgagtcaccattaatctgcatcttaatcacttgaatctgagt |
325 |
Q |
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| T |
47915756 |
ttgtacgaatatttgagagataatttttcgttttcggcgagattttaactagaaaatccgagtcaccattaatcggcatcttaatcaccggaatctgagt |
47915855 |
T |
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| Q |
326 |
taccatatattttatcatgcac |
347 |
Q |
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|||||||||||||||||||||| |
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| T |
47915856 |
taccatatattttatcatgcac |
47915877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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