View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5135-Insertion-2 (Length: 524)
Name: NF5135-Insertion-2
Description: NF5135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5135-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 7 - 524
Target Start/End: Complemental strand, 50324204 - 50323687
Alignment:
| Q |
7 |
acccatcattcttgaatggaaaaagatagatggtgcgaaggagacccgacgaaaaccaacgtatgtttaacagccgttagattgtattgtgatgtcagca |
106 |
Q |
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| T |
50324204 |
acccatcattcttgaatggaaaaagatagatggtgcgaaggagacccgacgaaaaccaacgtatgtttaaccgccgttagattgtattgtgatgtcagca |
50324105 |
T |
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| Q |
107 |
gattatattgtgaggtcagccatgttctacttttgtttgtttgaaaattataaatacactgcaacctttttatggtgtgcatgtcgtgcgttaaagctat |
206 |
Q |
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| T |
50324104 |
gattatattgtgaggtcagccatgttctacttttgtttgtttgaaaattataaatacactgcaacctttttatcgtgtgcatgtcgtgcgttaaagctgt |
50324005 |
T |
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| Q |
207 |
cgcatcatatagcatgtctcttcttgaattatctcctaatttcgctgatgctctaaattcttcattcaagtgtccatagctgcataaccactctttatac |
306 |
Q |
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| T |
50324004 |
cgcaccatatagcatgtctcttcttgaattatctcctaatttcgctgatgctctaaattcttcattcaagtgtccatagctgcataaccactctttatac |
50323905 |
T |
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| Q |
307 |
ccacacatgtgattactacaacctgagcctaagaaccatatcttcattgatgaagtagtttctcgttgagtaactgccatcaaaagaagcttttcttctt |
406 |
Q |
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| T |
50323904 |
ccacacatgtgattactacaacccgagcctaagaaccatatcttcattgatgaagtagtttctcgttgagtaactgccatcaaaagaagcctttcttctt |
50323805 |
T |
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| Q |
407 |
cattaaattggaaataatctccttttcctctcagttacgacatccattatgagaatgccctaatttatgacaattgaaatattcaatttcaatctactcc |
506 |
Q |
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| T |
50323804 |
cattaaattggaaataatctccttttcctctcagttacgacatccattatgagaatgtcctaatttatgacaattgaaatattcaatttcaatctcctcc |
50323705 |
T |
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| Q |
507 |
ttgttaaatgttttccac |
524 |
Q |
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| T |
50323704 |
ttattaaatgttttccac |
50323687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 44494035 - 44493833
Alignment:
| Q |
24 |
ggaaaaagatagatggtgcgaaggagacccgacgaaaaccaacgtatgtttaacagccgttagattgtattgtgatgtcagcagattatattgtgaggtc |
123 |
Q |
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| T |
44494035 |
ggaaaaagatagatggtgtgaaggagactcgacgaaaaccaacgaatgtttaatggccgttagattgtattgtaatgtcagcagattgtattgtgaggtc |
44493936 |
T |
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| Q |
124 |
agccatgttctacttttgtttgtttgaaaattataaatacactgcaacctttttatggtgtgcatgtcgtgcgttaaagctatcgcatcatatagcatgt |
223 |
Q |
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| T |
44493935 |
agccatgttctacttttgtttgtttgaaaattataaatacactgcaacctttttaccgtgtgcatgtcgtgcgttaaagttgtcgcaccatataccacgt |
44493836 |
T |
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| Q |
224 |
ctc |
226 |
Q |
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||| |
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| T |
44493835 |
ctc |
44493833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 31857042 - 31857123
Alignment:
| Q |
24 |
ggaaaaagatagatggtgcgaaggagacccgacgaaaaccaacgtatgtttaacagccgttagattgtattgtgatgtcagc |
105 |
Q |
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| T |
31857042 |
ggaaaaagatagatggtgcgaaggagacccgatgaaaaccaacgaatgtttaacagctgttagattgtattgtgatgtcagc |
31857123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 31857118 - 31857175
Alignment:
| Q |
121 |
gtcagccatgttctacttttgtttgtttgaaaattataaatacactgcaacctttttat |
179 |
Q |
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| T |
31857118 |
gtcagccatgttcta-ttttgtttgtttgaaaattataaatatactgcaacatttttat |
31857175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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