View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5135-Insertion-3 (Length: 350)
Name: NF5135-Insertion-3
Description: NF5135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5135-Insertion-3 |
 | |
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| [»] scaffold0341 (3 HSPs) |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 11868 - 12211
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttg |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11868 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttg |
11967 |
T |
|
| Q |
108 |
cagttccttccttccaatttctccatgcctgcacaaatctacccaaatgcaaatactactctttgttagatataatttcacttctaaagatgaaagatat |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11968 |
cagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttctaaacatgaaagatat |
12067 |
T |
|
| Q |
208 |
gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattct-cccatcacgaatgccactgttttttgcaccacttacaatttctaaaacc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12068 |
gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcaccacttacaatttctaaaacc |
12167 |
T |
|
| Q |
307 |
aatataccaaaactaaagacatcggattttactgagaactgtcc |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
12168 |
aatataccaaaactaaagacatcggattttactgaaaactgtcc |
12211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 4212 - 4399
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4212 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttg |
4311 |
T |
|
| Q |
108 |
cagttccttccttccaatttctccatgcctgcacaaatctacccaaatgcaaatactactctttgttagatataatttcacttctaaa |
195 |
Q |
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|||| || || |||||||||||||||||| ||||||| || ||| ||||| ||| | ||| |||||||||||||| |||||||||| |
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| T |
4312 |
cagtcccctctctccaatttctccatgcctacacaaatttatccagatgcatatatcattctatgttagatataattccacttctaaa |
4399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 338
Target Start/End: Original strand, 4452 - 4574
Alignment:
| Q |
217 |
aaaagtatgacttacaaagcttgagagatattctgtattctccc-atcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatatacca |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||| | ||||||||||||| |
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| T |
4452 |
aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcaccacttacaatttcaagaaccaatatacca |
4551 |
T |
|
| Q |
316 |
aaactaaagacatcggattttac |
338 |
Q |
| |
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||||| |||||||| |||||||| |
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| T |
4552 |
aaactgaagacatctgattttac |
4574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 6510188 - 6510531
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| | || ||||||||| |||||| |
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| T |
6510188 |
ctagctacattctcttgaacacaaagtaatccaatatgaatacatctaaaaatttcatttcgtgaatcattgtttaaagtagaatctatgataattgttg |
6510287 |
T |
|
| Q |
108 |
cagttccttccttccaatttctccatgcctgcacaaatctacccaaatgcaaatactactctttgttagatataatttcacttctaaagatgaaagatat |
207 |
Q |
| |
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|||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6510288 |
cagtaccatcaatccaatttctccatgcctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttctaaacatgaaagatat |
6510387 |
T |
|
| Q |
208 |
gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattct-cccatcacgaatgccactgttttttgcaccacttacaatttctaaaacc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6510388 |
gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcaccacttacaatttctaaaacc |
6510487 |
T |
|
| Q |
307 |
aatataccaaaactaaagacatcggattttactgagaactgtcc |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6510488 |
aatataccaaaactaaagacatcggattttactgaaaactgtcc |
6510531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 6497202 - 6497548
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| | | ||||||||| |||||| |
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|
| T |
6497202 |
ctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttg |
6497301 |
T |
|
| Q |
108 |
cagttccttccttccaatttctccatgcctgcacaaatctacccaaatgcaaatactactctttgttagatataatttcacttctaaagatgaaagatat |
207 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||| | ||||| ||||||| | || ||||||||||| | ||||||| | |||||| |||| |
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| T |
6497302 |
cagttccctccttccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataa-tacacttct--acatgaaatatat |
6497398 |
T |
|
| Q |
208 |
------gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctcc-catcacgaatgccactgttttttgcaccacttacaatttct |
300 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| || ||||| || ||||||||| |||| ||||||||||||||||||| ||||||||| ||||| |
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|
| T |
6497399 |
gatgacgatgacataaaaagtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttca |
6497498 |
T |
|
| Q |
301 |
aaaaccaatataccaaaactaaagacatcggattttactgagaactgtcc |
350 |
Q |
| |
|
| |||||||||||| ||||| || ||||| || || ||||| || ||||| |
|
|
| T |
6497499 |
agaaccaatataccgaaactgaatacatccgacttcactgaaaattgtcc |
6497548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 6502542 - 6502721
Alignment:
| Q |
16 |
attctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagttcct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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|
| T |
6502542 |
attctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccc |
6502641 |
T |
|
| Q |
116 |
tccttccaatttctccatgcctgcacaaatctacccaaatgcaaatactactctttgttagatataatttcacttctaaa |
195 |
Q |
| |
|
|| |||||||||||||||||| ||||||| || ||| ||||| ||| | ||| |||||||||||||| |||||||||| |
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|
| T |
6502642 |
tctctccaatttctccatgcctacacaaatttatccagatgcatatatcattctatgttagatataattccacttctaaa |
6502721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 6514552 - 6514689
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |||| |||||||||||| | | ||||||||||||| || |
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|
| T |
6514552 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaatgttggatctatgatatttgctg |
6514651 |
T |
|
| Q |
108 |
cagttccttccttccaatttctccatgcctgcacaaat |
145 |
Q |
| |
|
|||| || |||||||||||||||||||||| ||||||| |
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|
| T |
6514652 |
cagtcccctccttccaatttctccatgcctacacaaat |
6514689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 338
Target Start/End: Original strand, 6502773 - 6502895
Alignment:
| Q |
217 |
aaaagtatgacttacaaagcttgagagatattctgtattctccc-atcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatatacca |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||| | ||||||||||||| |
|
|
| T |
6502773 |
aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcaccacttacaatttcaagaaccaatatacca |
6502872 |
T |
|
| Q |
316 |
aaactaaagacatcggattttac |
338 |
Q |
| |
|
||||| |||||||| |||||||| |
|
|
| T |
6502873 |
aaactgaagacatctgattttac |
6502895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 336
Target Start/End: Original strand, 6514779 - 6514916
Alignment:
| Q |
200 |
aaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccc-atcacgaatgccactgttttttgcaccacttacaattt |
298 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||| ||||||||||| |||||||||| |||||| ||| ||| ||||||| |||||||||||||| |
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|
| T |
6514779 |
aaagatatgattgcatgacaattatgacttacaaagctcgagagatattccgtattctccccatcacggatgtaactattttttgtaccacttacaattt |
6514878 |
T |
|
| Q |
299 |
ctaaaaccaatataccaaaactaaagacatcggatttt |
336 |
Q |
| |
|
| | ||| ||||||||||||||||||||||| |||||| |
|
|
| T |
6514879 |
caagaactaatataccaaaactaaagacatctgatttt |
6514916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 47771598 - 47771525
Alignment:
| Q |
12 |
ctacattctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaatcattgtttaat |
85 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||||| | |||||||||| |||| |||||||||| |
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|
| T |
47771598 |
ctacattttcttgaacacaaagtaagccaatatggatgcatctcattatttcatttgctgaaatattgtttaat |
47771525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 47775750 - 47775677
Alignment:
| Q |
12 |
ctacattctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaatcattgtttaat |
85 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| | |||||||||| |||| |||||||||| |
|
|
| T |
47775750 |
ctacattttcttgaacacaaagtaaggcaatatggatacatctcattatttcatttgctgaaatattgtttaat |
47775677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 6525956 - 6525879
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaatcattgtttaat |
85 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||| ||||| ||||| | |||||| || |||||||||||||||| |
|
|
| T |
6525956 |
ctagctgcattttcttgaacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaat |
6525879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 28826853 - 28826984
Alignment:
| Q |
9 |
tagctacattctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgc |
108 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| |||||||| || ||||| | |||||||||| |||| |||| ||||| | ||||| ||||||| || |
|
|
| T |
28826853 |
tagctacattgtcttggacacatagtaagccaatatgaatgcatctcatgatttcatttcttgaactgttgtataataatggatctataatatttgcagc |
28826952 |
T |
|
| Q |
109 |
agttccttccttccaatttctccatgcctgca |
140 |
Q |
| |
|
||| ||||| ||||| ||||||||||||||| |
|
|
| T |
28826953 |
tgtttcttccctccaacttctccatgcctgca |
28826984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 28843804 - 28843869
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttaatatttcatttcgtgaa |
73 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||| || ||||| | |||||||||| |||| |
|
|
| T |
28843804 |
ctagctacattgtcttgcacacaaagtaacccaatatgaatgcatctcatgatttcatttcttgaa |
28843869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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