View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5135-Insertion-4 (Length: 230)
Name: NF5135-Insertion-4
Description: NF5135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5135-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 40007717 - 40007495
Alignment:
| Q |
8 |
ccaaagacctcatggatatcaaagcagggacatgacacttttcaaagatgaagacaatgttgcatatctaatatactcatctgaagaaaacaatgtaatg |
107 |
Q |
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| T |
40007717 |
ccaaagacctcatcgatatcaaagcagggacatgacacttttcaaagatgaagacaatgttgcatatctaatatactcatctgaagaaaacaatgtaatg |
40007618 |
T |
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| Q |
108 |
cacattggacccttgactgaagattatctcaatgtgacatctgttatgaaaagaattttcgtcggtcagcgaagagaagcgccggctatgttcaaacaca |
207 |
Q |
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| T |
40007617 |
cacattggacccttgactgaagattatctcaatgtgacatctgttatgaaaagaattttcgtcggtcagcgaagagaagcgccggctatgttcaaacaca |
40007518 |
T |
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| Q |
208 |
agggaacatatgacatggttaca |
230 |
Q |
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| T |
40007517 |
agggaacatattacatggttaca |
40007495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 5353387 - 5353528
Alignment:
| Q |
28 |
aaagcagggacatgacacttttcaaagatgaagacaatgttgcatatctaatatactcatctgaagaaaacaatgtaatgcacattggacccttgactga |
127 |
Q |
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|||||||||| |||||| |||||||||| || || ||||||||| || | ||||| || ||||| |||| || ||||||| |||||||| || | |
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| T |
5353387 |
aaagcagggatatgacagttttcaaagacgatgatggcgttgcatatatagtctactcctccgaagacaacagtgagctgcacataggacccttaaccca |
5353486 |
T |
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| Q |
128 |
agattatctcaatgtgacatctgttatgaaaagaattttcgt |
169 |
Q |
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| T |
5353487 |
agattatctcaatgtgacatctgtcatgagaaggattctcgt |
5353528 |
T |
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