View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5136-Insertion-2 (Length: 992)
Name: NF5136-Insertion-2
Description: NF5136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5136-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 696; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 8 - 723
Target Start/End: Complemental strand, 40007717 - 40007002
Alignment:
| Q |
8 |
ccaaagacctcatggatatcaaagcagggacatgacacttttcaaagatgaagacaatgttgcatatctaatatactcatctgaagaaaacaatgtaatg |
107 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40007717 |
ccaaagacctcatcgatatcaaagcagggacatgacacttttcaaagatgaagacaatgttgcatatctaatatactcatctgaagaaaacaatgtaatg |
40007618 |
T |
|
| Q |
108 |
cacattggacccttgactgaagattatctcaatgtgacatctgttatgaaaagaattttcgtcggtcagcgaagagaagcgccggctatgttcaaacaca |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40007617 |
cacattggacccttgactgaagattatctcaatgtgacatctgttatgaaaagaattttcgtcggtcagcgaagagaagcgccggctatgttcaaacaca |
40007518 |
T |
|
| Q |
208 |
agggaacatattacatggttacatcaggttgcactggatgggcaccaaatgaagcacttgttcattcagctgagacaatcttagggacatgggaaacaat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40007517 |
agggaacatattacatggttacatcaggttgcactggatgggcaccaaatgaagcacttgttcattcagctgagacaatcttagggacatgggaaacaat |
40007418 |
T |
|
| Q |
308 |
tggaaatccatgtgttgctggaaacaaaatgtttagagtttcgacttttcttgcacaaagtacttttgtgcttccattaactaggtttcctggtttgttt |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40007417 |
tggaaatccatgtgttgctggaaacaaaatgtttagagtttcgacttttcttgcacaaagtacttttgtgcttccattaactaggtttcctggtttgttt |
40007318 |
T |
|
| Q |
408 |
atcttcatggcggatagatggaatccaagtgagttaagagattctagatatgtttggttgcctttgattgttgatggacatgaagatcaagcatttcaat |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
40007317 |
atcttcatggcggatagatggaatccaagtgagttaagagattctagatatgtttggttgcctttaattgttgatggacatgaagatcaagcatttcaat |
40007218 |
T |
|
| Q |
508 |
atggttttgataacacattgtggccaagagtttctatctattggcacaaaaaatggaaactgcctttgggttggagcacattctcatgatgggtttttgt |
607 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
40007217 |
atggttttgataacaaattgtggccaagagtttctatctattggcacaaaaaatggaaactgcctttgggttggaacacattctaatgatgggtttttgt |
40007118 |
T |
|
| Q |
608 |
tgttgtacatttgtttaatttgcaatttcatcgaggaagcataaatccttaagaggtgtatccatgcaacagtgtcgtcagaagagaccttatggaagat |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40007117 |
tgttgtacatttgtttaatttgcaatttcatcgaggaagcataaatccttaagaggtgtatccatgcaacagtgtcgtcagaagagaccttatggaagat |
40007018 |
T |
|
| Q |
708 |
gtttatagatatgtac |
723 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
40007017 |
gtttatagatatgtac |
40007002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 761 - 991
Target Start/End: Complemental strand, 40006963 - 40006731
Alignment:
| Q |
761 |
aattattgagtggaaaatcacacattaagaatggaggagagggatattgcgattcgaactcgtcccaacacatcaaatatccttataaccttttaccata |
860 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
40006963 |
aattattgagtggaaaatcacacattaagaatggaggagagggatattgcgattcgaactcgccccaacacatcaaatatccttataaccttttaccata |
40006864 |
T |
|
| Q |
861 |
cgagttatacttatgggataaaa-tttgaactttatatt-atacaaacataaatgtcacattagattaaatgatagtatacacctgt-aaaaatttaccc |
957 |
Q |
| |
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|||| |||||||| | ||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |||| |||||||||| | |
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| T |
40006863 |
cgagctatacttacgagataaaattttgaactttatattaatacaaacataaatgtcacaattaattaaatgatagtataca-ctgtaaaaaatttacac |
40006765 |
T |
|
| Q |
958 |
acaatccatcatatcctaatattatgccactttg |
991 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |
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|
| T |
40006764 |
acaatcaatcatatcctactattatgccactttg |
40006731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 28 - 475
Target Start/End: Original strand, 5353387 - 5353834
Alignment:
| Q |
28 |
aaagcagggacatgacacttttcaaagatgaagacaatgttgcatatctaatatactcatctgaagaaaacaatgtaatgcacattggacccttgactga |
127 |
Q |
| |
|
|||||||||| |||||| |||||||||| || || ||||||||| || | ||||| || ||||| |||| || ||||||| |||||||| || | |
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| T |
5353387 |
aaagcagggatatgacagttttcaaagacgatgatggcgttgcatatatagtctactcctccgaagacaacagtgagctgcacataggacccttaaccca |
5353486 |
T |
|
| Q |
128 |
agattatctcaatgtgacatctgttatgaaaagaattttcgtcggtcagcgaagagaagcgccggctatgttcaaacacaagggaacatattacatggtt |
227 |
Q |
| |
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|||||||||||||||||||||||| |||| ||| ||| |||| || || | ||||||| |||||| | ||||| || |||| ||||| |||||| || |
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|
| T |
5353487 |
agattatctcaatgtgacatctgtcatgagaaggattctcgtgggacaacaccgagaagcaccggctctcttcaagcatcagggtacatactacatgatt |
5353586 |
T |
|
| Q |
228 |
acatcaggttgcactggatgggcaccaaatgaagcacttgttcattcagctgagacaatcttagggacatgggaaacaattggaaatccatgtgttgctg |
327 |
Q |
| |
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||||| |||||||| || ||||| |||||||| ||||| | ||| |||| ||| ||||| | ||| | ||||||||||| ||||||||||| | | | |
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|
| T |
5353587 |
acatcgggttgcacggggtgggccccaaatgaggcactggcgcatgcagcagagtcaatcatggggccgtgggaaacaatgggaaatccatgcttgggag |
5353686 |
T |
|
| Q |
328 |
gaaacaaaatgtttagagtttcgacttttcttgcacaaagtacttttgtgcttccattaactaggtttcctggtttgtttatcttcatggcggatagatg |
427 |
Q |
| |
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||||||||||||||||| | | ||||| |||| || || ||||| |||||||| | || | || ||||| ||| ||||||||||| ||| |||| |
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|
| T |
5353687 |
gaaacaaaatgtttagactcacaactttctttgctcagagcactttcgtgcttccgatttctggtttccctggagcgttcatcttcatggcagatcgatg |
5353786 |
T |
|
| Q |
428 |
gaatccaagtgagttaagagattctagatatgtttggttgcctttgat |
475 |
Q |
| |
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||||||| ||| |||||||| || |||||||| ||||| |||||||| |
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|
| T |
5353787 |
gaatccagctgacttaagagactcgagatatgtatggttacctttgat |
5353834 |
T |
|
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