View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5136-Insertion-4 (Length: 299)
Name: NF5136-Insertion-4
Description: NF5136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5136-Insertion-4 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 34873904 - 34873611
Alignment:
| Q |
8 |
cattcaacaatgtacacgaacaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatc |
107 |
Q |
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| T |
34873904 |
cattcaacaatgtacacgaacaagcttcaagaactatgtcaaaaaaactcataccctcttcccgaataccaaacaacccatgaaggaccactgcacaatc |
34873805 |
T |
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| Q |
108 |
ctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgc |
207 |
Q |
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| T |
34873804 |
ctcttttctcatcaaccgttaccgttaagtccatttccttcacttcaccagaacctgcaagcacccttaaggcatctcaagagtttgttgcgatggttgc |
34873705 |
T |
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| Q |
208 |
ttttcatcatttcctgcaaaacgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg--tttttcattg |
299 |
Q |
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| T |
34873704 |
ttttcatcatttcctgcaaaatgaaaacaccagttaagtcttgcaatctatgatgtttctttcctcaactgatatataaatgcatttttcattg |
34873611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 34871718 - 34872013
Alignment:
| Q |
8 |
cattcaacaatgtacacgaacaa--gcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaa |
105 |
Q |
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| T |
34871718 |
cattcaacaatgtacaagaacaaaagcttcaagaactatgtcaaaaaaactcttacccacttcccaaataccaaacaacccatgaaggaccactgcacaa |
34871817 |
T |
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| Q |
106 |
tcctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggtt |
205 |
Q |
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| T |
34871818 |
tcctcttttttcatcaaccgttaccgttaagtctatttccttcacttcaccaaaaccagcaagcacccttaaggcatctcaagagtttgctgcgatggtt |
34871917 |
T |
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| Q |
206 |
gcttttcatcatttcctgcaaaacgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg--tttttcattg |
299 |
Q |
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| T |
34871918 |
gcttttcatcatttcctgcaaaatgaaaacaacagttaagtcttgcaatccatgatgtttctttcctcaactgatttataaatgcatttttcattg |
34872013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 9911035 - 9911247
Alignment:
| Q |
7 |
acattcaacaatgtacacgaacaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaat |
106 |
Q |
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| T |
9911035 |
acattcaacaatgtacaagaccaagcttcaagaactatgtcaaaaaaattcataccctcttcccgaataccaaacaacccgtgaaggaccaccacacaat |
9911134 |
T |
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| Q |
107 |
cctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttg |
206 |
Q |
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| T |
9911135 |
tctcgtttctcaacaaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttg |
9911234 |
T |
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| Q |
207 |
cttttcatcattt |
219 |
Q |
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| T |
9911235 |
cttttcatcattt |
9911247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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