View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5136-Insertion-6 (Length: 351)
Name: NF5136-Insertion-6
Description: NF5136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5136-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 30942105 - 30941762
Alignment:
| Q |
8 |
aatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgta |
107 |
Q |
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| T |
30942105 |
aatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaagtacaaggtgcaggtggttctggttgtccataaaacatacaaccttgta |
30942006 |
T |
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| Q |
108 |
catgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgcgaaagtggaactggtggtctcatgttgtt |
207 |
Q |
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| T |
30942005 |
catgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtggtctcatgttgtt |
30941906 |
T |
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| Q |
208 |
caagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatgatgtttcttgctccaaa |
307 |
Q |
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| T |
30941905 |
caagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatgatgtttcttgctccaaa |
30941806 |
T |
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| Q |
308 |
ttcttgccatgaaaattgctaccactagtagacattttcttgtg |
351 |
Q |
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| T |
30941805 |
ttcttgccatgaaaattgctaccactagtagacattttcttgtg |
30941762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 37974981 - 37974937
Alignment:
| Q |
211 |
gtattgaccaaaagtgttccaatctcttctcttttgtgattcgta |
255 |
Q |
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| T |
37974981 |
gtattgaccaaaagtgttccaatcacgtctcttttgtgactcgta |
37974937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 39556610 - 39556357
Alignment:
| Q |
14 |
ccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaa |
113 |
Q |
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| T |
39556610 |
ccaattagagcatcaagacttccccaagcttgtctaagtggacatgtacaaggtgctggtggctctggctgtccataaaacatacaaccttgtaaatgaa |
39556511 |
T |
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| Q |
114 |
ccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgcgaaagtggaactggtggtctcatgttgttcaagta |
213 |
Q |
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| T |
39556510 |
ctttggtttttccaaattgatctaaatacctaagaaattccaacacatggttggaattgcagtgagaaagtggaacgggtggtcttaggttgtttaagta |
39556411 |
T |
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| Q |
214 |
ttgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgt |
267 |
Q |
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| T |
39556410 |
ttgaccaaaagtgttccaatctcttctcttttgagattcatagcggctaagtgt |
39556357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 32002141 - 32002397
Alignment:
| Q |
8 |
aatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgta |
107 |
Q |
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| T |
32002141 |
aatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtggttcggtttgtccgaaaaacaaacaaccttgta |
32002240 |
T |
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| Q |
108 |
catgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgcgaaagtggaactggtggtctcatgttgtt |
207 |
Q |
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| T |
32002241 |
agtgcacttttgtttttccaaattgatccaagtaccttaggaattcaagaacatggtttgaattacaatttgatagtgccactggtggtctttgattcct |
32002340 |
T |
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| Q |
208 |
caagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaag |
264 |
Q |
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| T |
32002341 |
taagtattgtccaaaagtgttccaatctcttctcttttgtgactcgtatcgactaag |
32002397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 4863244 - 4863129
Alignment:
| Q |
35 |
ccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggt |
134 |
Q |
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| T |
4863244 |
ccccaagcttgtctcaacggacaagtacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgat |
4863145 |
T |
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| Q |
135 |
ctaagtaacgaaggaa |
150 |
Q |
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| T |
4863144 |
ctaagtaacgaaggaa |
4863129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 166
Target Start/End: Complemental strand, 35814703 - 35814569
Alignment:
| Q |
32 |
cttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaatt |
131 |
Q |
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| T |
35814703 |
cttccccaagcttgcttgagaggacaagcacaaggtgcaggtggggtaggttgtccaaagaagatgcaaccttgaaagtgaaccttagtcttaccaaatt |
35814604 |
T |
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| Q |
132 |
ggtctaagtaacgaaggaaatccaaaacatggttg |
166 |
Q |
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| || | ||||||||| ||||| | |||||||||| |
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| T |
35814603 |
gatcaaggtaacgaagaaaatcaagaacatggttg |
35814569 |
T |
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