View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5136_low_1 (Length: 220)
Name: NF5136_low_1
Description: NF5136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5136_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 37497947 - 37498137
Alignment:
| Q |
14 |
agagacagtgacgcaattagcatatcaactatcttacctagcagacatacaatcacaatcagaaaatgcagctggctttagttaaaagaaagatgaaacg |
113 |
Q |
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| T |
37497947 |
agagacagtgacgcaattagcatatcaactagcttacctagcagacatacaatcacaatcagaaaatgcagctggctttagttaaaagaaagatgaaacg |
37498046 |
T |
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| Q |
114 |
cagtcaatggatgaagatgaacacaaatattgatattgttactataattatgtgttaatttcggttgacatttgttactttataatatttt |
204 |
Q |
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| T |
37498047 |
cagtcaatggatgaagatgaacacaaatattgatattgttactataattatgtgttaatttcggttgacatttgttactttataatatttt |
37498137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 37504585 - 37504693
Alignment:
| Q |
89 |
ctttagttaaaagaaagatgaaacgcagtcaatggatgaagatgaacacaaata-ttgatattgttactataattatgtgttaatttcggttgacatttg |
187 |
Q |
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| T |
37504585 |
ctttagttaaaagaaagatcaaactcaatcaatgaatgaagacaaacataaattgttgatatttttaatataattatgtgttaatttcagttaacatttg |
37504684 |
T |
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| Q |
188 |
ttactttat |
196 |
Q |
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| T |
37504685 |
ttactttat |
37504693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 37500603 - 37500752
Alignment:
| Q |
27 |
caattagcatatcaactatctt-acctagcagacatacaatcacaatcagaaaatgcagctggctttagttaaaagaaagatgaaacgcagtcaatggat |
125 |
Q |
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|||||| || |||||||| ||| |||||||||||| | || |||||| |||| || || || |||||||||||| || |||| |||| || ||||||||| |
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| T |
37500603 |
caattaacagatcaactagctttacctagcagacaaaaaaacacaattagaagatacaactagctttagttaaaggacagatcaaacacaatcaatggat |
37500702 |
T |
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| Q |
126 |
gaagatgaa--cacaaatattgatattgttactataattatgtgttaatt |
173 |
Q |
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| T |
37500703 |
gaatatgaaacctaaattgtttatgttgttactataattatgtgttaatt |
37500752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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