View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5136_low_2 (Length: 205)
Name: NF5136_low_2
Description: NF5136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5136_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 40007715 - 40007906
Alignment:
| Q |
1 |
tggctcccgaggtatttgaatggaccggtaggagtatcactgaatgctatgccaacggaagctttggcgtaattggcgttgtcgatatgcatccacatca |
100 |
Q |
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| T |
40007715 |
tggctcccgaggtatttgaatggaccggtaggagtatcactgaatgctatgccaacggtagctttggcgtaattggcgttgtcgatatgcatccacatca |
40007814 |
T |
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| Q |
101 |
catactttcttgttttttcattgtaaataacttttggtctctcaagcacattggacttgtgtagatcatgtgttttatctgttttctctgct |
192 |
Q |
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| T |
40007815 |
catactttcttgttttttcattgtaaataacttttggtctctcaagcacattggacttgtgtagatcatgtgttttatctgttttctctgct |
40007906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 5353333 - 5353178
Alignment:
| Q |
37 |
tcactgaatgctatgccaacggaagctttggcgtaattggcgttgtcgatatgcatccacatcacatactttcttgttttttcattgtaaataacttttg |
136 |
Q |
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| T |
5353333 |
tcactgattgctacgccaacagacgctttggtgtagttagcatcatcaatatgcatccacatcacatacttttcagtcttctcattgtaaatcacttttg |
5353234 |
T |
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| Q |
137 |
gtctctcaagcacattggacttgtgtagatcatgtgttttatctgttttctctgct |
192 |
Q |
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| T |
5353233 |
gcctctcgagcacgttagatttgtgcagatcatgggtttcatctgtttcctctgct |
5353178 |
T |
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