View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5137-Insertion-2 (Length: 420)
Name: NF5137-Insertion-2
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5137-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 420
Target Start/End: Complemental strand, 10331117 - 10330713
Alignment:
| Q |
16 |
atatatatttccccacatattttttatggggaacaagatcaaattttagataactatcgtaatccatttggctatagatatcttttttgtttcctcgcgt |
115 |
Q |
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| T |
10331117 |
atatatatttccccacatattttttatggggaacaagatcaaattttagataactatcataatctatttggctatagatatcttttttgtttcctcgcgt |
10331018 |
T |
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| Q |
116 |
gaaaaactcacaatatacagtacattaactatatagcaatctcatactcaaagaagaatccatgatagctagctaaagagggaaaatcaagaattgaaat |
215 |
Q |
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| T |
10331017 |
gaaaaattcacaatatatagtacattaactatatagcaatctcatactcaaagaagaatccatgatagctagctaaagagggaaaatcaagaattgaaat |
10330918 |
T |
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| Q |
216 |
tattttgcgcaataattctcatgtttgaattatattgtttttgaaggcatctaagaaaaatttagtgctaattagtgtgatacgagggatagatgctaag |
315 |
Q |
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| T |
10330917 |
tattttgcgcaataattctcatgtttgaattatattgtttttgaaggcatctaagaaaaatttagggctaattagtgtgatacgagggatagatgctaag |
10330818 |
T |
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| Q |
316 |
aaattctttaagtatcataaggtaagcagggacggtggacatggtataattttccaaattttgtgatatagtctaacaaaagatttgaatttggtgccga |
415 |
Q |
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| T |
10330817 |
aaattctttaagtatcataaggtaagcagggacggtggacatggtataattttccaaattttgtgatatagtctaacaaaagatttgaatttggtgccga |
10330718 |
T |
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| Q |
416 |
tggaa |
420 |
Q |
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| T |
10330717 |
tggaa |
10330713 |
T |
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