View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5137-Insertion-3 (Length: 345)
Name: NF5137-Insertion-3
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5137-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 7841582 - 7841247
Alignment:
| Q |
8 |
aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtttcatacccttgaatttg |
107 |
Q |
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| T |
7841582 |
aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcaaataatggttctggtggtttcatacccttgaatttg |
7841483 |
T |
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| Q |
108 |
ttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaaaatatccatttttgagg |
207 |
Q |
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| T |
7841482 |
ttactaggttttttgatcttccatatgttgtatataagcactaaaagtatagctagtactatatttattggctgtgaaaggaaaatatccatttttgagg |
7841383 |
T |
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| Q |
208 |
aagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttgaaaaattaatgcattgaaatggagtgcaagaca |
307 |
Q |
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| T |
7841382 |
gagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttgaaaaattaatgcattgaaatggagtgcaagaca |
7841283 |
T |
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| Q |
308 |
ggggaataatagtggttaacttggaaccaaatgacta |
344 |
Q |
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| T |
7841282 |
tgtgaataatagtggttaa-tttgaaccaaatgacta |
7841247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 7845508 - 7845197
Alignment:
| Q |
8 |
aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtttcatacccttgaatttg |
107 |
Q |
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| T |
7845508 |
aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtttcatacccttgaatttg |
7845409 |
T |
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| Q |
108 |
ttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaaaatatccatttttgagg |
207 |
Q |
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| T |
7845408 |
ttactaggttttttgatcttccatatgttgtatataagcactaaaagtatagctagtactgtatttattggttgtgaaaggaaaatatccatttttgagg |
7845309 |
T |
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| Q |
208 |
aagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttgaaaaattaatgcattgaaatggagtgcaagaca |
307 |
Q |
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| T |
7845308 |
gagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtggttaatttgaaaaattaatgcattgaaatggagtgcaagaca |
7845209 |
T |
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| Q |
308 |
ggggaataatag |
319 |
Q |
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| T |
7845208 |
tgtgaataatag |
7845197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 7839526 - 7839215
Alignment:
| Q |
8 |
aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtttcatacccttgaatttg |
107 |
Q |
| |
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|||| |||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7839526 |
aaagtttcttgcaagagagatttattttcctagtagatggagctgacctattaatggtaatgcaaataatggttctggtggtttcatacccttgaatttg |
7839427 |
T |
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| Q |
108 |
ttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaaaatatccatttttgagg |
207 |
Q |
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| T |
7839426 |
ttactaggttttttgatcttccatatgttgtatagaagtactaaaagtattgctagtactgtatttattggttgcgaaaggaaaatatccatttttgagg |
7839327 |
T |
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| Q |
208 |
aagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttgaaaaattaatgcattgaaatggagtgcaagaca |
307 |
Q |
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| T |
7839326 |
gagtatagatgtttcgcatgatttttgataagagagctatcatggtgttcttatagtggttaatttgaaaaattaatgcattgaaatggagtgcaagaca |
7839227 |
T |
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| Q |
308 |
ggggaataatag |
319 |
Q |
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| T |
7839226 |
tgtgaataatag |
7839215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 3657297 - 3657039
Alignment:
| Q |
8 |
aaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtttcatacccttgaatttg |
107 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
3657297 |
aaagattcttgcaagagggatttggtttcctagtagatggaggtgacctattaaaggtaaggcatatgatggttctggtggtttcatacccttgaatttg |
3657198 |
T |
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| Q |
108 |
ttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaaaatatccatttttgagg |
207 |
Q |
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|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| || ||| |||| | |||| |||||||||||| || |
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| T |
3657197 |
ttactaggtttttttaccctccatatgttgtatagaagcactaaaagtatagctagtactatagttgctggttgtgtatagaaattatccatttttgtgg |
3657098 |
T |
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| Q |
208 |
aagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgg |
266 |
Q |
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|||| |||||| | |||||||||||| |||| | ||||||| || ||||| |||||| |
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| T |
3657097 |
gagtaaagatgtgttacatgatttttgagaagataactatcattgttttcttttagtgg |
3657039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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