View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5137-Insertion-4 (Length: 320)

Name: NF5137-Insertion-4
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5137-Insertion-4
NF5137-Insertion-4
[»] chr8 (16 HSPs)
chr8 (6-165)||(43399869-43400028)
chr8 (169-300)||(41478989-41479119)
chr8 (166-300)||(23115352-23115485)
chr8 (169-300)||(43959549-43959680)
chr8 (166-300)||(42735461-42735594)
chr8 (166-300)||(5576805-5576938)
chr8 (166-300)||(2705003-2705136)
chr8 (167-300)||(7507083-7507215)
chr8 (170-300)||(26374614-26374741)
chr8 (166-300)||(32711466-32711599)
chr8 (177-255)||(26373705-26373782)
chr8 (165-258)||(24214817-24214909)
chr8 (215-300)||(42938301-42938386)
chr8 (166-204)||(8543408-8543446)
chr8 (166-204)||(24502050-24502088)
chr8 (167-204)||(42937250-42937287)
[»] chr7 (20 HSPs)
chr7 (167-300)||(973074-973207)
chr7 (166-300)||(44343580-44343713)
chr7 (166-300)||(30440686-30440819)
chr7 (166-300)||(12893298-12893431)
chr7 (166-300)||(40996833-40996967)
chr7 (166-300)||(8078285-8078418)
chr7 (166-296)||(18914923-18915052)
chr7 (167-300)||(43581274-43581406)
chr7 (165-258)||(43679358-43679451)
chr7 (167-300)||(31638766-31638898)
chr7 (169-300)||(727405-727535)
chr7 (168-300)||(32143103-32143235)
chr7 (167-300)||(47879059-47879191)
chr7 (167-300)||(47914157-47914289)
chr7 (169-300)||(20275447-20275577)
chr7 (166-258)||(34695121-34695212)
chr7 (166-300)||(34008905-34009035)
chr7 (221-300)||(34695217-34695296)
chr7 (167-258)||(39219561-39219651)
chr7 (213-300)||(7719444-7719532)
[»] chr3 (24 HSPs)
chr3 (166-300)||(20498098-20498230)
chr3 (166-300)||(19253715-19253848)
chr3 (167-300)||(37820662-37820794)
chr3 (166-300)||(35337622-35337756)
chr3 (166-300)||(996271-996403)
chr3 (166-293)||(3206388-3206514)
chr3 (170-300)||(6589455-6589585)
chr3 (166-300)||(10139331-10139464)
chr3 (166-300)||(22057651-22057782)
chr3 (216-300)||(44762222-44762306)
chr3 (166-249)||(12734076-12734158)
chr3 (161-237)||(52114413-52114488)
chr3 (166-300)||(40246732-40246865)
chr3 (216-300)||(23753571-23753655)
chr3 (165-204)||(33996771-33996810)
chr3 (163-202)||(52079878-52079917)
chr3 (166-204)||(16010751-16010789)
chr3 (170-204)||(29029898-29029932)
chr3 (166-204)||(29449140-29449178)
chr3 (166-204)||(33808082-33808120)
chr3 (166-300)||(25418254-25418387)
chr3 (213-257)||(6131440-6131484)
chr3 (227-300)||(51699664-51699737)
chr3 (227-300)||(54625540-54625613)
[»] chr4 (22 HSPs)
chr4 (166-300)||(41881268-41881402)
chr4 (167-300)||(24131157-24131289)
chr4 (166-300)||(22201903-22202036)
chr4 (166-300)||(25331019-25331152)
chr4 (166-300)||(1044698-1044830)
chr4 (167-300)||(28541587-28541719)
chr4 (167-300)||(37046637-37046769)
chr4 (166-300)||(30009862-30009995)
chr4 (166-250)||(42786655-42786739)
chr4 (213-300)||(19741093-19741180)
chr4 (169-300)||(31314913-31315043)
chr4 (177-300)||(32951021-32951143)
chr4 (168-300)||(1112784-1112914)
chr4 (166-300)||(40537330-40537463)
chr4 (168-300)||(46635827-46635959)
chr4 (213-292)||(25504832-25504911)
chr4 (167-300)||(7249957-7250090)
chr4 (166-300)||(39479542-39479675)
chr4 (216-300)||(20021281-20021365)
chr4 (213-300)||(23464889-23464976)
chr4 (213-300)||(34228768-34228854)
chr4 (166-300)||(41320638-41320769)
[»] chr2 (17 HSPs)
chr2 (166-300)||(20605042-20605175)
chr2 (165-300)||(35316951-35317085)
chr2 (165-300)||(16269580-16269714)
chr2 (166-300)||(24776245-24776378)
chr2 (166-300)||(31170811-31170944)
chr2 (163-300)||(44765662-44765798)
chr2 (168-300)||(14198764-14198894)
chr2 (167-300)||(22551950-22552082)
chr2 (166-300)||(305652-305787)
chr2 (166-300)||(1789332-1789465)
chr2 (166-300)||(12407270-12407403)
chr2 (166-292)||(9120058-9120183)
chr2 (178-300)||(32125152-32125273)
chr2 (221-300)||(20605180-20605259)
chr2 (225-300)||(5093234-5093309)
chr2 (166-299)||(26601388-26601520)
chr2 (171-204)||(5093319-5093352)
[»] chr1 (18 HSPs)
chr1 (166-300)||(953701-953834)
chr1 (166-300)||(22183252-22183385)
chr1 (169-300)||(47654537-47654669)
chr1 (166-300)||(730031-730163)
chr1 (165-300)||(35279553-35279687)
chr1 (166-300)||(28824557-28824690)
chr1 (163-300)||(49198453-49198588)
chr1 (166-300)||(21222030-21222162)
chr1 (166-297)||(45760198-45760328)
chr1 (166-258)||(19452077-19452168)
chr1 (213-300)||(14494137-14494224)
chr1 (221-300)||(19451993-19452072)
chr1 (166-300)||(49417966-49418099)
chr1 (166-300)||(6304438-6304572)
chr1 (167-300)||(35679313-35679445)
chr1 (167-258)||(47780502-47780592)
chr1 (227-300)||(45535886-45535959)
chr1 (166-204)||(28541386-28541424)
[»] chr6 (5 HSPs)
chr6 (166-300)||(29076485-29076619)
chr6 (166-300)||(29111458-29111592)
chr6 (166-300)||(2300922-2301055)
chr6 (166-300)||(6197662-6197795)
chr6 (167-300)||(1391513-1391645)
[»] chr5 (11 HSPs)
chr5 (166-300)||(21146956-21147089)
chr5 (167-293)||(33656234-33656359)
chr5 (167-300)||(6460682-6460814)
chr5 (166-258)||(7016923-7017014)
chr5 (166-249)||(43319135-43319218)
chr5 (30-83)||(39546072-39546125)
chr5 (167-300)||(27459133-27459265)
chr5 (178-300)||(32158082-32158204)
chr5 (216-300)||(139211-139295)
chr5 (169-300)||(5273145-5273276)
chr5 (168-204)||(16894138-16894174)
[»] scaffold0037 (1 HSPs)
scaffold0037 (166-300)||(100100-100233)
[»] scaffold0400 (1 HSPs)
scaffold0400 (213-300)||(15218-15305)
[»] scaffold0365 (1 HSPs)
scaffold0365 (213-300)||(15861-15948)
[»] scaffold0651 (1 HSPs)
scaffold0651 (169-300)||(8654-8784)
[»] scaffold0276 (1 HSPs)
scaffold0276 (221-300)||(724-803)
[»] scaffold0151 (1 HSPs)
scaffold0151 (167-250)||(38755-38837)
[»] scaffold0004 (2 HSPs)
scaffold0004 (167-204)||(102026-102063)
scaffold0004 (266-300)||(102081-102115)
[»] scaffold0113 (1 HSPs)
scaffold0113 (166-251)||(39087-39171)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 43399869 - 43400028
Alignment:
Q  6 caagtgcaaccagcacggtattagatgtgcttaatttcatgcatgttattgtgatctattctatttatctatgaatttcatgcatatatactctatttaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43399869 caagtgcaaccagcacggtattagatgtgcttaatttcatgcatgttattgtcatctattctatttatctatgaatttcatgcatatatactctatttaa 43399968  T
Q  106 ttcatgcattttaactctttaatatgctaagactcttctttaatacttttctttgattta 165  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43399969 ttcatgcattttaattctttaatatgctaagactcttctttaatacttttctttgattta 43400028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 300
Target Start/End: Original strand, 41478989 - 41479119
Alignment:
Q  169 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngtt 268  Q
    ||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||       |||    
T  41478989 gtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtt 41479087  T
Q  269 ttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||||||||||||| ||||||||||||||    
T  41479088 ttgtgttattcaatcaagattctttgtcattt 41479119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 23115485 - 23115352
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  23115485 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 23115387  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  23115386 gtcttgtgttattcaatcaagattctttgtcattt 23115352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 300
Target Start/End: Original strand, 43959549 - 43959680
Alignment:
Q  169 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngtt 268  Q
    |||||||||||||||||| ||| |||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||       ||     
T  43959549 gtgtatttgatcatgattttaaaggattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtc 43959648  T
Q  269 ttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||||||||||||| ||||||||||||||    
T  43959649 ttgtgttattcaatcaagattctttgtcattt 43959680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 42735594 - 42735461
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  42735594 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 42735496  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||| ||||||    
T  42735495 gtcttgtgttattcaatcaagattctttatcattt 42735461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 5576938 - 5576805
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||| ||||||||||||||||||||||||         |||||| | ||||||||||||||| ||| ||||||||||||||||           
T  5576938 ggggtgtattggattatgattctaagggattttaaaagatttttttg-tcatgaaatagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 5576840  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  5576839 gtcttgtgttattcaatcaagattctttgtcattt 5576805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 2705136 - 2705003
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| |||||||||| ||| |||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||| ||           
T  2705136 ggggtgtattggatcatgattgtaaaggattttaaaagattttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaaattaaaaaaa 2705038  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  2705037 gtcttgtgttattcaatcaagattctttgtcattt 2705003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 7507215 - 7507083
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||            
T  7507215 gggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaaa 7507117  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
     |||||||||||||||| | |||| |||||||||    
T  7507116 gtttgtgttattcaatcgagattccttgtcattt 7507083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 300
Target Start/End: Complemental strand, 26374741 - 26374614
Alignment:
Q  170 tgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttt 269  Q
    |||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||| ||||| ||| ||||||||||||||||       |  |    
T  26374741 tgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaagtcttgtgatattcaatcaagactctttccaatttaaaaaaag--t 26374645  T
Q  270 tgtgttattcaatcaaaattctttgtcattt 300  Q
    |||||||||||||||| ||||||||||||||    
T  26374644 tgtgttattcaatcaagattctttgtcattt 26374614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 32711599 - 32711466
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||| || |||||||||        ||||||| ||||| ||||||||||| ||| ||||||||| ||||||           
T  32711599 ggggtgtattggatcatgattctaagagactttaaaagactttttt-atcatgaaaaagttttgtggtattcaatcaagactcttttcaatttaaaaaaa 32711501  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  32711500 gtcttgtgttattcaatcaagattctttgtcattt 32711466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 26373705 - 26373782
Alignment:
Q  177 gatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaa 255  Q
    ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| |||||||||||||    
T  26373705 gatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaa 26373782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 24214909 - 24214817
Alignment:
Q  165 aggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt 258  Q
    ||||||||||| |||||||||||||| |||||||||||||        ||||| | ||||||||||||||||| ||| ||||||||| ||||||    
T  24214909 aggggtgtattggatcatgattctaaaggattttaaaaga-cttttttatcataaaaaagtcttgtggtattcaatcaagactcttttcaattt 24214817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 42938386 - 42938301
Alignment:
Q  215 catgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||| ||||||||||||||||| ||| ||||||||| ||||||       || ||||||||||||||||| ||| ||||||||||    
T  42938386 catgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaagtcttgtgttattcaatcaagattatttgtcattt 42938301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 8543408 - 8543446
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaaga 204  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  8543408 ggggtgtattagatcatgattctaagggattttaaaaga 8543446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 24502088 - 24502050
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaaga 204  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  24502088 ggggtgtattggatcatgattctaaaggattttaaaaga 24502050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 42937250 - 42937287
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaaga 204  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  42937250 gggtgtattggatcatgattttaagggattttaaaaga 42937287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 167 - 300
Target Start/End: Original strand, 973074 - 973207
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||       |    
T  973074 gggtgtattggatcatgattctaagggattttaaaagattttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaag 973173  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||||||||||||||| ||||||||||||||    
T  973174 ttttgtgttattcaatcaagattctttgtcattt 973207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 44343713 - 44343580
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  44343713 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 44343615  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  44343614 gtcttgtgttattcaatcaagattctttgtcattt 44343580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 30440686 - 30440819
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||| ||||||||||||| ||| ||||||||||||||||           
T  30440686 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaaatcttgtggtattcaatcaagactctttccaatttaaaaaaa 30440784  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  30440785 gtcttgtgttattcaatcaagattctttgtcattt 30440819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 12893298 - 12893431
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| |||||||||||||||| |||||||||||         |||||| ||||||||||||||||| ||| ||||||||||||||||           
T  12893298 ggggtgtattggatcatgattctaaggtattttaaaagatttttttt-tcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 12893396  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  12893397 gtcttgtgttattcaatcaagattctttgtcattt 12893431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 40996967 - 40996833
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| |||||||||||||||||||||||||| |        ||||||| | ||||||||||||||| ||| ||||||||||||||||           
T  40996967 ggggtgtattggatcatgattctaagggattttaaaatattttttttatcatgaaagagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 40996868  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || | ||||||||||||||| ||||||||||||||    
T  40996867 gtctcgtgttattcaatcaagattctttgtcattt 40996833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 8078285 - 8078418
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||| | ||||||||||||||||| ||| ||||||||||||||||           
T  8078285 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcataaaaaagtcttgtggtattcaatcaagactctttccaattttaaaaaa 8078383  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
      |||||||||||||||||| ||||||||||||||    
T  8078384 aatttgtgttattcaatcaagattctttgtcattt 8078418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 296
Target Start/End: Complemental strand, 18915052 - 18914923
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| |||||||  |||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  18915052 ggggtgtattggatcatgtatctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaattttaaaaaa 18914954  T
Q  266 gttttgtgttattcaatcaaaattctttgtc 296  Q
    || ||||||||||||||||||||||||||||    
T  18914953 gtcttgtgttattcaatcaaaattctttgtc 18914923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 43581406 - 43581274
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    ||||||||| |||||||||||||| | |||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||       |    
T  43581406 gggtgtattggatcatgattctaaagaattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaag 43581308  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||||||||||||||| ||||||||||||||    
T  43581307 tcttgtgttattcaatcaagattctttgtcattt 43581274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 258
Target Start/End: Original strand, 43679358 - 43679451
Alignment:
Q  165 aggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt 258  Q
    |||| |||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  43679358 agggatgtattggatcatgattctaagggattttaaaagattttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaattt 43679451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 300
Target Start/End: Original strand, 31638766 - 31638898
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    |||||||||  |||||||||||||| ||||||||||||        ||||||| |||||| |||||||||| ||| ||||||||| ||||||       |    
T  31638766 gggtgtattgaatcatgattctaagagattttaaaagactttttt-atcatgaaaaagtcatgtggtattcaatcaagactcttttcaatttaaaaaaag 31638864  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||||||||||||||||||||||||||||||    
T  31638865 tcttgtgttattcaatcaaaattctttgtcattt 31638898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 300
Target Start/End: Original strand, 727405 - 727535
Alignment:
Q  169 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngtt 268  Q
    ||||||| |||||||||||||| |||||||||| ||        ||||||| ||||||||| ||||||| ||| ||||||||| ||||||       ||     
T  727405 gtgtattggatcatgattctaatggattttaaatgactttttt-atcatgaaaaagtcttgcggtattcaatcaagactcttttcaatttaaaaaaagtc 727503  T
Q  269 ttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||||||||||||||||||||||||||||    
T  727504 ttgtgttattcaatcaaaattctttgtcattt 727535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 32143235 - 32143103
Alignment:
Q  168 ggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngt 267  Q
    |||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||| ||||| ||| |||||||||| |||||       ||    
T  32143235 ggtgtattggatcatgattctaagggattttaaaagactttttttatcatgaaaaagtcttgtgatattcaatcaagactctttctaatttaaaaaaagt 32143136  T
Q  268 tttgtgttattcaatcaaaattctttgtcattt 300  Q
     |||||||||||||| ||  || ||||||||||    
T  32143135 cttgtgttattcaataaattttttttgtcattt 32143103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 300
Target Start/End: Original strand, 47879059 - 47879191
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    |||||||||  |||||||||||||||||||||||||||        || |||| ||||||||||||||||| ||| | ||||||| ||||||       |    
T  47879059 gggtgtattgaatcatgattctaagggattttaaaagacttattt-ataatgaaaaagtcttgtggtattcaatcaatactcttttcaattttaaaaaag 47879157  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||||||||||||||| ||||||||||||||    
T  47879158 tcttgtgttattcaatcaagattctttgtcattt 47879191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 300
Target Start/End: Original strand, 47914157 - 47914289
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    |||||||||  |||||||||||||||||||||||||||        || |||| ||||||||||||||||| ||| | ||||||| ||||||       |    
T  47914157 gggtgtattgaatcatgattctaagggattttaaaagacttattt-ataatgaaaaagtcttgtggtattcaatcaatactcttttcaattttaaaaaag 47914255  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||||||||||||||| ||||||||||||||    
T  47914256 tcttgtgttattcaatcaagattctttgtcattt 47914289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 20275577 - 20275447
Alignment:
Q  169 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngtt 268  Q
    ||||||| ||||||||||||||||||||||||||||        |||||||  |||||||||||||||| ||| ||| ||||||||||||       ||     
T  20275577 gtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaataagtcttgtggtattcaatcaagattctttccaatttaaaaaaagtc 20275479  T
Q  269 ttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||| ||||||||||||| |||| |||||||||    
T  20275478 ttgggttattcaatcaagattccttgtcattt 20275447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 34695121 - 34695212
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt 258  Q
    ||||||||||  |||||||||||||||||||||||||||        || |||| ||||||||||||||||| ||| ||||||||||||||||    
T  34695121 ggggtgtattgaatcatgattctaagggattttaaaaga-cttttttattatgaaaaagtcttgtggtattcaatcaagactctttccaattt 34695212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 34008905 - 34009035
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||   |||||||| ||| ||||||||| ||||||           
T  34008905 ggggtgtattggatcatgattctaagggattttaaaaga-tttttttatcatgaaaaagtc---tggtattcaatcaagactcttttcaatttaaaaaaa 34009000  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||| ||||||||||    
T  34009001 gtcttgtgttattcaatcaagattatttgtcattt 34009035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 34695217 - 34695296
Alignment:
Q  221 aaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||||||||||||| ||| ||||||||||||||||       || ||||||||||||||||| |||| |||||||||    
T  34695217 aaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattccttgtcattt 34695296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 39219651 - 39219561
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt 258  Q
    ||||||||| |||||| ||||||||| |||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  39219651 gggtgtattggatcataattctaaggaattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaattt 39219561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 7719532 - 7719444
Alignment:
Q  213 atcatgataaagtcttgtggtattccatcca-gactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||| ||| ||||||||||||| ||| | |||||||||||||||       || ||||||||||||||||| ||| ||||||||||    
T  7719532 atcatgaaaaattcttgtggtattcaatcaaagactctttccaatttaaaaaaagtcttgtgttattcaatcaatattatttgtcattt 7719444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 20498098 - 20498230
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  20498098 ggggtgtattggatcatgattctaagggattttaaaagacttttt--atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 20498195  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||||||||||||||||||| ||||||||||||||    
T  20498196 gttttgtgttattcaatcaagattctttgtcattt 20498230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 19253715 - 19253848
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    ||||| |||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  19253715 ggggtttattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 19253813  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  19253814 gtcttgtgttattcaatcaagattctttgtcattt 19253848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 37820794 - 37820662
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    |||| |||| ||| ||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||       |    
T  37820794 gggtatattggataatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaag 37820696  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||||||||||||||| ||||||||||||||    
T  37820695 tcttgtgttattcaatcaagattctttgtcattt 37820662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 35337622 - 35337756
Alignment:
Q  166 ggggtgtatttga-tcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnn 264  Q
    ||||||||||||| ||||||||||||||||||||||||||        || |||| ||||||||||||||||| ||| ||||||||||||||||          
T  35337622 ggggtgtatttgaatcatgattctaagggattttaaaagactttttt-attatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaa 35337720  T
Q  265 ngttttgtgttattcaatcaaaattctttgtcattt 300  Q
     || ||||||||||||||||| |||| |||||||||    
T  35337721 agtcttgtgttattcaatcaagattccttgtcattt 35337756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 996403 - 996271
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||| ||           
T  996403 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaa-ttaaaaaaa 996306  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||| ||||||    
T  996305 gtcttgtgttattcaatcaagattctttatcattt 996271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 3206514 - 3206388
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||| ||||||           
T  3206514 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaa 3206416  T
Q  266 gttttgtgttattcaatcaaaattcttt 293  Q
    || ||||| ||||||||||| |||||||    
T  3206415 gtcttgtggtattcaatcaagattcttt 3206388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 6589455 - 6589585
Alignment:
Q  170 tgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttt 269  Q
    |||||| |||||||||||||||||| |||||||||        ||||||| ||||||||||||||||| ||  |||||||||| |||||       || |    
T  6589455 tgtattggatcatgattctaagggactttaaaagactttttttatcatgaaaaagtcttgtggtattcaattaagactctttctaatttaaaaaaagtct 6589554  T
Q  270 tgtgttattcaatcaaaattctttgtcattt 300  Q
    |||||||||||||||| |||| |||||||||    
T  6589555 tgtgttattcaatcaatattccttgtcattt 6589585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 10139464 - 10139331
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    ||||||||||  ||||||||||||||||||||||||| |        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  10139464 ggggtgtattgaatcatgattctaagggattttaaaatactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 10139366  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| |||| || ||||||    
T  10139365 gtcttgtgttattcaatcaagattccttatcattt 10139331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 22057651 - 22057782
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||| ||||||||||| |||     ||||||||||||           
T  22057651 ggggtgtattggatcatgattctaagggattttaaaagactttttttatcatgaaaaagtattgtggtattcaatc---gttctttccaatttaaaaaaa 22057747  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  22057748 gtcttgtgttattcaatcaagattctttgtcattt 22057782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 44762306 - 44762222
Alignment:
Q  216 atgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||| ||||||||||||||||| ||| ||||||||| ||||||       || ||||||||||||||||| ||||||||||||||    
T  44762306 atgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcattt 44762222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 12734158 - 12734076
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactct 249  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| |||||||    
T  12734158 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaagactct 12734076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 52114413 - 52114488
Alignment:
Q  161 atttaggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattc 237  Q
    ||||||||||||| | |||||||||||||||| |||||||||||        |||||||||||||||||||||||||    
T  52114413 atttaggggtgtactggatcatgattctaaggaattttaaaaga-tttttttatcatgataaagtcttgtggtattc 52114488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 40246732 - 40246865
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||| |||||||||| |        ||| ||| ||||||||||||||||| ||| ||||||||||   |||           
T  40246732 ggggtgtattggatcatgattctaagagattttaaaa-aacttttttatcgtgaaaaagtcttgtggtattcaatcaagactctttctggtttaaaaaaa 40246830  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
     | ||||||||||||||||| ||||||||||||||    
T  40246831 atcttgtgttattcaatcaagattctttgtcattt 40246865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 23753655 - 23753571
Alignment:
Q  216 atgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||| ||||||||||||||||| ||| ||||| ||| ||||||       || ||||| ||||||||||| ||||||||||||||    
T  23753655 atgaaaaagtcttgtggtattcaatcaagactttttgcaatttaaaaaaagtcttgtggtattcaatcaagattctttgtcattt 23753571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 33996810 - 33996771
Alignment:
Q  165 aggggtgtatttgatcatgattctaagggattttaaaaga 204  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  33996810 aggggtgtattggatcatgattctaagggattttgaaaga 33996771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 52079878 - 52079917
Alignment:
Q  163 ttaggggtgtatttgatcatgattctaagggattttaaaa 202  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  52079878 ttaggggtgtattggatcatgattctaagtgattttaaaa 52079917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 16010751 - 16010789
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaaga 204  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  16010751 ggggtgtattggatcataattctaagggattttaaaaga 16010789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 29029898 - 29029932
Alignment:
Q  170 tgtatttgatcatgattctaagggattttaaaaga 204  Q
    |||||| ||||||||||||||||||||||||||||    
T  29029898 tgtattggatcatgattctaagggattttaaaaga 29029932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 29449178 - 29449140
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaaga 204  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  29449178 ggggtgtattagatcatgattataagggattttaaaaga 29449140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 33808120 - 33808082
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaaga 204  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  33808120 ggggtgtattgaatcatgattctaagggattttaaaaga 33808082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 25418254 - 25418387
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    ||||| |||| ||||||||||||||| |||||||||| |        ||||||| ||  | ||||||||||| ||| | |||||||||| |||           
T  25418254 ggggtttattggatcatgattctaagagattttaaaa-aatttttttatcatgaaaattttttgtggtattcaatcaaaactctttccattttaaaaaaa 25418352  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  25418353 gtcttgtgttattcaatcaagattctttgtcattt 25418387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 6131484 - 6131440
Alignment:
Q  213 atcatgataaagtcttgtggtattccatccagactctttccaatt 257  Q
    ||||||| ||||| ||||||||||| ||| |||||||||||||||    
T  6131484 atcatgaaaaagttttgtggtattcaatcaagactctttccaatt 6131440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 51699737 - 51699664
Alignment:
Q  227 ttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||||||| ||| ||||||||| ||||||       || |||| |||||||||||| ||||||||||||||    
T  51699737 ttgtggtattcaatcaagactcttttcaatttaaaaaaagtcttgtattattcaatcaagattctttgtcattt 51699664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 54625540 - 54625613
Alignment:
Q  227 ttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||| |||||| ||| ||||||||||||||||       || ||||||||||||||||| |||| |||||||||    
T  54625540 ttgtagtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaatattcgttgtcattt 54625613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 41881402 - 41881268
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| |||||||||| |||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  41881402 ggggtgtattggatcatgattttaagggattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaattttaaaaaa 41881303  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  41881302 gtcttgtgttattcaatcaagattctttgtcattt 41881268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 24131289 - 24131157
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||       |    
T  24131289 gggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaag 24131191  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||||||||||||||| ||||||||||||||    
T  24131190 tcttgtgttattcaatcaagattctttgtcattt 24131157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 22201903 - 22202036
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||| ||||| ||| ||||||||||||||||           
T  22201903 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtgatattcaatcaagactctttccaatttaaaaaaa 22202001  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  22202002 gtcttgtgttattcaatcaagattctttgtcattt 22202036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 25331019 - 25331152
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||  ||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  25331019 ggggtgtattggatcatgattctaaaagattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 25331117  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  25331118 gtcttgtgttattcaatcaagattctttgtcattt 25331152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 1044698 - 1044830
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  1044698 ggggtgtattggatcatgattctaagggattttaaaaga-tttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaattt-aaaaaa 1044795  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| |||| |||||||||    
T  1044796 gtcttgtgttattcaatcaagattccttgtcattt 1044830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 167 - 300
Target Start/End: Original strand, 28541587 - 28541719
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    ||||||||| ||||||||||||||||||||||||||||        || |||| ||||||||||||||||| ||| ||||||||| ||||||       |    
T  28541587 gggtgtattggatcatgattctaagggattttaaaagacattttt-attatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaag 28541685  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||||||||||||||| ||||||||||||||    
T  28541686 tcttgtgttattcaatcaagattctttgtcattt 28541719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 37046769 - 37046637
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    ||||||||| |||||||||||||||| |||||||||||        ||||| | ||||||||||||||||| ||| ||||||||| ||||||       |    
T  37046769 gggtgtattggatcatgattctaaggaattttaaaagatattttt-atcataaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaag 37046671  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||||||||||||||| ||||||||||||||    
T  37046670 tcttgtgttattcaatcaagattctttgtcattt 37046637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 30009995 - 30009862
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        || |||| |||||||| | |||||| ||| ||||||||||||||||           
T  30009995 ggggtgtattggatcatgattctaagggattttaaaaga-catttttattatgaaaaagtcttattgtattcaatcaagactctttccaatttaaaaaaa 30009897  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || |||||||||| |||||||||||||| ||||||    
T  30009896 gtcttgtgttatttaatcaaaattctttatcattt 30009862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 42786655 - 42786739
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctt 250  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||    
T  42786655 ggggtgtattggatcatgattctaagggattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactctt 42786739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 19741180 - 19741093
Alignment:
Q  213 atcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||| ||| ||||||||||||| ||| ||||||||||||||||       || ||||||||||||||||| ||||||||||||||    
T  19741180 atcatgaaaaaatcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcattt 19741093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 31315043 - 31314913
Alignment:
Q  169 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngtt 268  Q
    ||||||| ||||||||||||||||||||||||||||        ||||||| ||||| ||||||||||| ||| ||||| ||| ||||||       ||     
T  31315043 gtgtattggatcatgattctaagggattttaaaaga-tttttttatcatgaaaaagtattgtggtattcaatcaagacttttttcaatttaaaaaaagtc 31314945  T
Q  269 ttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||||||||| |||||| ||||||||||||||    
T  31314944 ttgtgttatttaatcaagattctttgtcattt 31314913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 300
Target Start/End: Complemental strand, 32951143 - 32951021
Alignment:
Q  177 gatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgtta 276  Q
    ||||||||||||||||||||||||||||        || |||| ||||||||||||||||| ||| ||||||||| ||||||       || ||||||||    
T  32951143 gatcatgattctaagggattttaaaagactttttt-ataatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaagtcttgtgtta 32951045  T
Q  277 ttcaatcaaaattctttgtcattt 300  Q
    ||||||||| ||| ||||||||||    
T  32951044 ttcaatcaagattatttgtcattt 32951021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 300
Target Start/End: Original strand, 1112784 - 1112914
Alignment:
Q  168 ggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngt 267  Q
    |||||||| |||||||||||||||  |||||||||||        ||||||| ||||||||||| ||||| ||| ||||||||||| ||||       ||    
T  1112784 ggtgtattggatcatgattctaag--attttaaaagactttttttatcatgaaaaagtcttgtgttattcaatcaagactctttccgatttaaaaaaagt 1112881  T
Q  268 tttgtgttattcaatcaaaattctttgtcattt 300  Q
     |||| |||||||||||| ||||||||||||||    
T  1112882 attgtattattcaatcaagattctttgtcattt 1112914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 40537463 - 40537330
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| |||||||||| |||||||||||||||||        ||||| | ||||||||||||||||| ||  |||||||||| |||||           
T  40537463 ggggtgtattggatcatgattgtaagggattttaaaagacttttgt-atcataaaaaagtcttgtggtattcaattaagactctttctaatttaaaaaaa 40537365  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| | ||||||||||||    
T  40537364 gtcttgtgttattcaatcaagactctttgtcattt 40537330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 46635959 - 46635827
Alignment:
Q  168 ggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaa-gtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    |||||||| ||||||||||||||| ||||||||||||        ||||||| ||| |||||||||||||| ||| ||||||||||||||||            
T  46635959 ggtgtattggatcatgattctaagagattttaaaagactttttt-atcatgaaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaaa 46635861  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | |||| |||||||||||| ||||||||||||||    
T  46635860 tcttgtattattcaatcaagattctttgtcattt 46635827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 25504911 - 25504832
Alignment:
Q  213 atcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctt 292  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||       || ||||||||||||||||| ||||||    
T  25504911 atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctt 25504832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 7250090 - 7249957
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt-nnnnnnn 265  Q
    ||||||||| |||||||||||||||| |||||||||||        ||||||| ||| ||||||||||||| ||| ||||||||| ||||||            
T  7250090 gggtgtattggatcatgattctaaggaattttaaaaga-cttttttatcatgaaaaaatcttgtggtattcaatcaagactcttttcaatttaaaaaaaa 7249992  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| |||||| |||||||    
T  7249991 gtcttgtgttattcaatcaagattcttagtcattt 7249957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 39479675 - 39479542
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| |||||||||| ||||  |||||||||||        ||||| | ||||||||||||||||| ||| ||||||||| ||||||           
T  39479675 ggggtgtattggatcatgattttaagaaattttaaaagactttttt-atcataaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaa 39479577  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| |||| |||||||||    
T  39479576 gtcttgtgttattcaatcaagattccttgtcattt 39479542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 20021281 - 20021365
Alignment:
Q  216 atgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||| ||||||||||||||||  ||| ||||||||| ||||||       |||||||| ||||||||||| ||||||||||||||    
T  20021281 atgaaaaagtcttgtggtatttaatcaagactctttgcaatttaaaaaaagttttgtggtattcaatcaagattctttgtcattt 20021365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 23464889 - 23464976
Alignment:
Q  213 atcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||| |       || |||| |||||||||||| |||| |||||||||    
T  23464889 atcatgaaaaagtcttgtggtattcaatcaagactctttccaatataaaaaaagtcttgtattattcaatcaagattccttgtcattt 23464976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 34228854 - 34228768
Alignment:
Q  213 atcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||| ||||||||||||||||| ||| ||||||||| ||||||       | | |||||||||||||||| ||||||||||||||    
T  34228854 atcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaag-tctgtgttattcaatcaagattctttgtcattt 34228768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 41320638 - 41320769
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||  ||||||||||||        || |||| ||||||  ||||||||| ||| ||||| ||||||||||           
T  41320638 ggggtgtattggatcatgattctaaaagattttaaaagattttttt-attatgaaaaagtc--gtggtattcaatcaagactgtttccaatttaaaaaat 41320734  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  41320735 gtcttgtgttattcaatcaagattctttgtcattt 41320769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 20605042 - 20605175
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  20605042 ggggtgtattggatcatgattctaagggattttaaaagacttttta-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 20605140  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  20605141 gtcttgtgttattcaatcaagattctttgtcattt 20605175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 35316951 - 35317085
Alignment:
Q  165 aggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnn 264  Q
    |||||||||||  ||||||||||||||||||||||||| |        ||||||| ||||||||||||||||| ||| ||||||||||||||||          
T  35316951 aggggtgtattgaatcatgattctaagggattttaaaa-aacttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaa 35317049  T
Q  265 ngttttgtgttattcaatcaaaattctttgtcattt 300  Q
     |||||||||||||||||||| ||||||||||||||    
T  35317050 agttttgtgttattcaatcaagattctttgtcattt 35317085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 16269580 - 16269714
Alignment:
Q  165 aggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnn 264  Q
    ||||||||||| ||||||||||||||||||||||||||||        || |||| ||||||||||||||||| ||| ||||||||||||||||          
T  16269580 aggggtgtattggatcatgattctaagggattttaaaagactttttt-attatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaa 16269678  T
Q  265 ngttttgtgttattcaatcaaaattctttgtcattt 300  Q
     || ||||||||||||||||| ||||||||||||||    
T  16269679 agtcttgtgttattcaatcaagattctttgtcattt 16269714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 24776245 - 24776378
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| |||||||||| |||||           
T  24776245 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttctaatttaaaaaaa 24776343  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  24776344 gtcttgtgttattcaatcaagattctttgtcattt 24776378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 31170944 - 31170811
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||| ||||| ||| ||||||||||||||||           
T  31170944 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtgatattcaatcaagactctttccaatttaaaaaaa 31170846  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  31170845 gtcttgtgttattcaatcaagattctttgtcattt 31170811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 300
Target Start/End: Original strand, 44765662 - 44765798
Alignment:
Q  163 ttaggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnn 262  Q
    |||| |||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| | ||||||||||||||        
T  44765662 ttagaggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaaaactctttccaatttaaaa 44765760  T
Q  263 nnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
       || ||||||||||||||||| ||||||||||||||    
T  44765761 aaagtcttgtgttattcaatcaagattctttgtcattt 44765798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 14198894 - 14198764
Alignment:
Q  168 ggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngt 267  Q
    |||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| |||||||||| |||||       ||    
T  14198894 ggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaagactctttctaattt-aaaaaagt 14198797  T
Q  268 tttgtgttattcaatcaaaattctttgtcattt 300  Q
     ||||||||||||||||||||||||||||||||    
T  14198796 cttgtgttattcaatcaaaattctttgtcattt 14198764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 22552082 - 22551950
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||| | ||||||||||       |    
T  22552082 gggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagattttttccaatttaaaaaaag 22551984  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||||||||||||||| ||||||||||||||    
T  22551983 tcttgtgttattcaatcaagattctttgtcattt 22551950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 305787 - 305652
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt-nnnnnn 264  Q
    |||||||||| ||||||||||||||| ||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  305787 ggggtgtattggatcatgattctaagcgattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 305688  T
Q  265 ngttttgtgttattcaatcaaaattctttgtcattt 300  Q
     || ||||||||||||||||| ||| ||||||||||    
T  305687 agtcttgtgttattcaatcaagattatttgtcattt 305652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 1789332 - 1789465
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||| ||||||||||||        ||||| | ||||||||||||||||| ||| | ||||||||||||||           
T  1789332 ggggtgtattggatcatgattctaagagattttaaaagattttttt-atcataaaaaagtcttgtggtattcaatcaaaactctttccaatttaaaaaaa 1789430  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  1789431 gtcttgtgttattcaatcaagattctttgtcattt 1789465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 12407270 - 12407403
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||| ||||||||||||        ||||||| ||||||||||||||||| ||| ||| ||||| ||||||           
T  12407270 ggggtgtattggatcatgattctaagagattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagattcttttcaattttaaaaaa 12407368  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  12407369 gtcttgtgttattcaatcaagattctttgtcattt 12407403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 292
Target Start/End: Original strand, 9120058 - 9120183
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||| || |||||||||| ||| ||||||||||||||||           
T  9120058 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaaatcatgtggtattcaatcaagactctttccaattttaaaaaa 9120156  T
Q  266 gttttgtgttattcaatcaaaattctt 292  Q
    || ||||||||||||||||| ||||||    
T  9120157 gtcttgtgttattcaatcaagattctt 9120183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 32125152 - 32125273
Alignment:
Q  178 atcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttat 277  Q
    ||||||||| |||||||||||||||||        || |||| ||||||||||||||||| ||| ||||||||| ||||||       || |||||||||    
T  32125152 atcatgattttaagggattttaaaagactttttt-ataatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaagtcttgtgttat 32125250  T
Q  278 tcaatcaaaattctttgtcattt 300  Q
    |||||||||||||||||||||||    
T  32125251 tcaatcaaaattctttgtcattt 32125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 20605180 - 20605259
Alignment:
Q  221 aaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||||||||||||| ||| ||||||||||||||||       || ||||||||||||||||| ||||||||||||||    
T  20605180 aaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcattt 20605259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 5093309 - 5093234
Alignment:
Q  225 tcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||||||||| ||| ||||||||||||||||       || ||||||||||||||||| ||||||||||||||    
T  5093309 tcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcattt 5093234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 299
Target Start/End: Complemental strand, 26601520 - 26601388
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||| |||||| |||||||||||||        || || | ||||||||||||||||| ||| | |||||||| |||||           
T  26601520 ggggtgtattggatcatgtttctaaaggattttaaaagactttttt-attattaaaaagtcttgtggtattcaatcaaaactctttctaatttaaaaaaa 26601422  T
Q  266 gttttgtgttattcaatcaaaattctttgtcatt 299  Q
    ||||||||||||| |||||| | |||||||||||    
T  26601421 gttttgtgttatttaatcaagactctttgtcatt 26601388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 5093352 - 5093319
Alignment:
Q  171 gtatttgatcatgattctaagggattttaaaaga 204  Q
    ||||| ||||||||||||||||||||||||||||    
T  5093352 gtattggatcatgattctaagggattttaaaaga 5093319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 953701 - 953834
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  953701 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 953799  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  953800 gtcttgtgttattcaatcaagattctttgtcattt 953834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 22183252 - 22183385
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| |||||||||||||| |||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||           
T  22183252 ggggtgtattggatcatgattctaaaggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 22183350  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||||||||||||||||||| ||||||||||||||    
T  22183351 gttttgtgttattcaatcaagattctttgtcattt 22183385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 47654669 - 47654537
Alignment:
Q  169 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngt- 267  Q
    ||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||       ||     
T  47654669 gtgtattggatcatgattctaagggattttaaaagactttttttatcatgaaaaagtcttgtggtattcgatcaagactctttccaatttaaaaaaagtc 47654570  T
Q  268 tttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||||||||||||||||| ||||||||||||||    
T  47654569 tttgtgttattcaatcaagattctttgtcattt 47654537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 730031 - 730163
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||         |||||| ||||||||||||||||| ||| ||||||||||||||||           
T  730031 ggggtgtattggatcatgattctaagggattttaaaagactttttt--tcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaa 730128  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  730129 gtcttgtgttattcaatcaagattctttgtcattt 730163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 35279553 - 35279687
Alignment:
Q  165 aggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnn 264  Q
    ||||||||||| ||||||||||||||| ||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||||||||||          
T  35279553 aggggtgtattggatcatgattctaagagattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaa 35279651  T
Q  265 ngttttgtgttattcaatcaaaattctttgtcattt 300  Q
     |  ||||||||||||||||| ||||||||||||||    
T  35279652 agacttgtgttattcaatcaagattctttgtcattt 35279687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 28824690 - 28824557
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| |||||||||| |||||           
T  28824690 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttctaatttaaaaaaa 28824592  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||| ||||||||||    
T  28824591 gtcttgtgttattcaatcaagattatttgtcattt 28824557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 300
Target Start/End: Complemental strand, 49198588 - 49198453
Alignment:
Q  163 ttaggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnn 262  Q
    ||||||||||||| |||||||||||||||| |||||||||||        ||||||| ||||||||||||||||| ||| ||||||||| ||||||        
T  49198588 ttaggggtgtattggatcatgattctaaggaattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaagactcttttcaattt-aaa 49198491  T
Q  263 nnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
       || ||||||||||||||||| ||||||||||||||    
T  49198490 aaagtcttgtgttattcaatcaagattctttgtcattt 49198453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 21222030 - 21222162
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| |||||||||||||||||||||||||||         ||||||| ||||||||||||||||| ||| ||||||||| ||||||           
T  21222030 ggggtgtattggatcatgattctaagggattttaaaag-gcttttttatcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaa 21222128  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | |||||||||||||||||| ||||||||||||||    
T  21222129 g-tttgtgttattcaatcaagattctttgtcattt 21222162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 45760328 - 45760198
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| | ||||||| ||||||           
T  45760328 ggggtgtattggatcatgattctaagggattttaaaagattttttt-atcatgaaaaagtcttgtggtattcaatcaaaactcttttcaatttaaaaaaa 45760230  T
Q  266 gttttgtgttattcaatcaaaattctttgtca 297  Q
    || ||||||||||||||||| |||||||||||    
T  45760229 gtcttgtgttattcaatcaagattctttgtca 45760198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 19452168 - 19452077
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt 258  Q
    |||||||||| ||||||||||||||||||||||||||||        ||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  19452168 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcttgaaaaagtcttgtggtattcaatcaagactctttccaattt 19452077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 14494137 - 14494224
Alignment:
Q  213 atcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||| ||| ||||||||||||| ||| ||||||||||||||||       || ||||||||||||||||| ||||||||||||||    
T  14494137 atcatgaaaaaatcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcattt 14494224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 19452072 - 19451993
Alignment:
Q  221 aaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||||||||||||| ||| ||||||||||||||||       || ||||||||||||||||| ||||||||||||||    
T  19452072 aaagtcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcattt 19451993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 49417966 - 49418099
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    ||||| |||| ||||||||||||||| ||||||||||||        ||||||| |||||| |||| ||||| ||| ||||||||||||||||           
T  49417966 ggggtatattggatcatgattctaagagattttaaaagactttttt-atcatgaaaaagtcatgtgatattcaatcaagactctttccaatttagaaaaa 49418064  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| |||| |||||||||    
T  49418065 gtcttgtgttattcaatcaagattcattgtcattt 49418099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 6304572 - 6304438
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt-nnnnnn 264  Q
    |||||||||| |||||||||||||| |||||||||||||         |||||| ||||||||||||||||| ||| ||||| ||||||||||           
T  6304572 ggggtgtattggatcatgattctaaaggattttaaaagacttttttt-tcatgaaaaagtcttgtggtattcaatcaagactatttccaatttaaaaaaa 6304474  T
Q  265 ngttttgtgttattcaatcaaaattctttgtcattt 300  Q
     ||  |||||||||||||||| ||||||||||||||    
T  6304473 agtactgtgttattcaatcaagattctttgtcattt 6304438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 35679445 - 35679313
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    |||||||||  ||||||||| |||||||||||||||||        || |||| ||||||||||||||||| ||| || |||||| ||||||       |    
T  35679445 gggtgtattgaatcatgattttaagggattttaaaagactttttt-ataatgaaaaagtcttgtggtattcaatcaaggctcttttcaatttaaaaaaag 35679347  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||| ||||||||||| ||||||||||||||    
T  35679346 tcttgtggtattcaatcaagattctttgtcattt 35679313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 47780502 - 47780592
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt 258  Q
    ||||||||| |||||||||||||||  |||||||||||        ||||||| ||||||||||||||||| ||| ||||||||| ||||||    
T  47780502 gggtgtattggatcatgattctaagaaattttaaaagattttttt-atcatgaaaaagtcttgtggtattcaatcaagactcttttcaattt 47780592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 45535886 - 45535959
Alignment:
Q  227 ttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||| ||||| ||| ||||||||||||||||       || ||||||||||||||||| ||||||||||||||    
T  45535886 ttgtgatattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaatattctttgtcattt 45535959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 28541386 - 28541424
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaaga 204  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  28541386 ggggtgtattggatcatgattctaagcgattttaaaaga 28541424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 29076485 - 29076619
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||| ||||||||||||        ||||||| ||||||||||| ||||| ||| ||||||||||||||||           
T  29076485 ggggtgtattggatcatgattctaagagattttaaaagactttttttatcatgaaaaagtcttgtgatattcaatcaagactctttccaatttaaataaa 29076584  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  29076585 gtcttgtgttattcaatcaagattctttgtcattt 29076619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 29111458 - 29111592
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||| ||||||||||||        ||||||| ||||||||||| ||||| ||| ||||||||||||||||           
T  29111458 ggggtgtattggatcatgattctaagagattttaaaagactttttttatcatgaaaaagtcttgtgatattcaatcaagactctttccaatttaaataaa 29111557  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  29111558 gtcttgtgttattcaatcaagattctttgtcattt 29111592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 2301055 - 2300922
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||| ||||||           
T  2301055 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaa 2300957  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  2300956 gtcttgtgttattcaatcaagattctttgtcattt 2300922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 6197795 - 6197662
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| |||||||||||||||||||||||||| |        ||||||| |||||| |||||||||| ||| ||||||||||||||||           
T  6197795 ggggtgtattggatcatgattctaagggattttaaaa-aacttttttatcatgaaaaagtcgtgtggtattcaatcaagactctttccaatttaaaaaaa 6197697  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  6197696 gtcttgtgttattcaatcaagattctttgtcattt 6197662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 300
Target Start/End: Original strand, 1391513 - 1391645
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    ||||||||| |||||||||||||| |||||||||| ||        ||||||| ||||||||||||||||| ||| ||||||||||||||||       |    
T  1391513 gggtgtattggatcatgattctaaaggattttaaatgactttttt-atcatgaaaaagtcttgtggtattcaatcaagactctttccaatttaaaaaaag 1391611  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | ||||||||||||||||| |||| |||||||||    
T  1391612 tcttgtgttattcaatcaagattcattgtcattt 1391645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 21146956 - 21147089
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||| |||||||||| ||| ||||||||||||||||           
T  21146956 ggggtgtattggatcatgattctaagggattttaaaagactttttt-atcatgaaaaagtcgtgtggtattcaatcaagactctttccaatttaaaaaaa 21147054  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  21147055 gtcttgtgttattcaatcaagattctttgtcattt 21147089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 33656359 - 33656234
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    ||||||||| |||||||||| |||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||| ||||||       |    
T  33656359 gggtgtattggatcatgattttaagggattttaaaagattttttt-atcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaag 33656261  T
Q  267 ttttgtgttattcaatcaaaattcttt 293  Q
    | ||||||||||||||||| |||||||    
T  33656260 tcttgtgttattcaatcaagattcttt 33656234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 300
Target Start/End: Original strand, 6460682 - 6460814
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    |||||||||  |||||||||||||||||||||||||||        || |||| ||||||||||||||||| ||| ||||||||||||| ||       |    
T  6460682 gggtgtattgaatcatgattctaagggattttaaaaga-tttttttataatgaaaaagtcttgtggtattcaatcaagactctttccaacttaaaaaaag 6460780  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | || |||||||||||||| ||||||||||||||    
T  6460781 tcttatgttattcaatcaagattctttgtcattt 6460814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 7017014 - 7016923
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt 258  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||| ||||||    
T  7017014 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaagactcttttcaattt 7016923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 43319135 - 43319218
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactct 249  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| |||||||    
T  43319135 ggggtgtattggatcatgattctaagggattttaaaagactttttttatcatgaaaaagtcttgtggtattcaatcaagactct 43319218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 39546072 - 39546125
Alignment:
Q  30 atgtgcttaatttcatgcatgttattgtgatctattctatttatctatgaattt 83  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  39546072 atgtgtttaatttcatgcatattagtgtgatctattctatttatctatgaattt 39546125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 27459265 - 27459133
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnng 266  Q
    ||||||||| |||||||||||||| ||||||||||| |        ||||||| ||||||| || |||||| ||| ||||||||||||||||       |    
T  27459265 gggtgtattggatcatgattctaacggattttaaaa-aacttttttatcatgaaaaagtctcgtagtattcaatcaagactctttccaatttaaaaaaag 27459167  T
Q  267 ttttgtgttattcaatcaaaattctttgtcattt 300  Q
    | |||||||||||||| || ||||||||||||||    
T  27459166 tcttgtgttattcaattaagattctttgtcattt 27459133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 32158204 - 32158082
Alignment:
Q  178 atcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaattt-nnnnnnngttttgtgtta 276  Q
    ||||||||||||||| |||||||||||        ||||||| ||||||||||||||||| ||| ||||||||| ||||||        || ||||||||    
T  32158204 atcatgattctaaggaattttaaaagactttttt-atcatgaaaaagtcttgtggtattcaatcaagactcttttcaatttaaaaaaaagtcttgtgtta 32158106  T
Q  277 ttcaatcaaaattctttgtcattt 300  Q
    ||||||||| ||||||||||||||    
T  32158105 ttcaatcaagattctttgtcattt 32158082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 139211 - 139295
Alignment:
Q  216 atgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||| |||||||| | |||||| ||| ||||||||| ||||||       |||||||||||||||||||| ||||||||||||||    
T  139211 atgaaaaagtcttttagtattcaatcaagactcttttcaatttaaaaaaagttttgtgttattcaatcaagattctttgtcattt 139295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 5273276 - 5273145
Alignment:
Q  169 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaag-tcttgtggtattccatccagactctttccaatttnnnnnnngt 267  Q
    ||||||| |||||||||| |||||||||||||||||        ||||||| |||  ||||||||||||| ||| ||| ||||||||||||       ||    
T  5273276 gtgtattggatcatgattttaagggattttaaaagactttttt-atcatgaaaaaaatcttgtggtattcaatcaagattctttccaatttaaaaaaagt 5273178  T
Q  268 tttgtgttattcaatcaaaattctttgtcattt 300  Q
     ||||||||||||||||| ||| ||||||||||    
T  5273177 cttgtgttattcaatcaagattttttgtcattt 5273145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 16894174 - 16894138
Alignment:
Q  168 ggtgtatttgatcatgattctaagggattttaaaaga 204  Q
    |||||||| |||||| |||||||||||||||||||||    
T  16894174 ggtgtattggatcataattctaagggattttaaaaga 16894138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 100100 - 100233
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnn 265  Q
    |||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||| || ||||| ||| | || |||||||||||           
T  100100 ggggtgtattggatcatgattctaagggattttaaaaga-cttttttatcatgaaaaagtcttctgatattcaatcaacacactttccaatttaaaaaaa 100198  T
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    || ||||||||||||||||| ||||||||||||||    
T  100199 gtcttgtgttattcaatcaagattctttgtcattt 100233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 15305 - 15218
Alignment:
Q  213 atcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||| ||| ||||||||||||| ||| ||||||||||||||||       || ||||||||||||||||| ||||||||||||||    
T  15305 atcatgaaaaaatcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcattt 15218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 15948 - 15861
Alignment:
Q  213 atcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||| ||| ||||||||||||| ||| ||||||||||||||||       || ||||||||||||||||| ||||||||||||||    
T  15948 atcatgaaaaaatcttgtggtattcaatcaagactctttccaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcattt 15861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 300
Target Start/End: Original strand, 8654 - 8784
Alignment:
Q  169 gtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctttccaatttnnnnnnngtt 268  Q
    ||||||| ||||||||||||||||||||||||||||        ||||||| ||||| ||||||||||| ||| ||||| ||| ||||||       ||     
T  8654 gtgtattggatcatgattctaagggattttaaaaga-tttttttatcatgaaaaagtattgtggtattcaatcaagacttttttcaatttaaaaaaagtc 8752  T
Q  269 ttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||||||||| |||||| ||||||||||||||    
T  8753 ttgtgttatttaatcaagattctttgtcattt 8784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 803 - 724
Alignment:
Q  221 aaagtcttgtggtattccatccagactctttccaatttnnnnnnngttttgtgttattcaatcaaaattctttgtcattt 300  Q
    ||||||||||||||||| ||| ||||||||| ||||||       || ||||||||||||||||| ||||||||||||||    
T  803 aaagtcttgtggtattcaatcaagactctttacaatttaaaaaaagtcttgtgttattcaatcaagattctttgtcattt 724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 38837 - 38755
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactctt 250  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||| ||| ||||||||    
T  38837 gggtgtattggatcatgattctaagggattttaaaaga-tatttttatcatgaaaaagtcttgtggtattcaatcaagactctt 38755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 102026 - 102063
Alignment:
Q  167 gggtgtatttgatcatgattctaagggattttaaaaga 204  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  102026 gggtgtattagatcatgattctaagggattttaaaaga 102063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 102081 - 102115
Alignment:
Q  266 gttttgtgttattcaatcaaaattctttgtcattt 300  Q
    |||||||||||||||||||| ||||||||||||||    
T  102081 gttttgtgttattcaatcaagattctttgtcattt 102115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 39171 - 39087
Alignment:
Q  166 ggggtgtatttgatcatgattctaagggattttaaaagannnnnnnnatcatgataaagtcttgtggtattccatccagactcttt 251  Q
    |||||||||| |||||||||||||| |||||||||||||        ||||||| ||||||||||||||||| ||| ||| |||||    
T  39171 ggggtgtattggatcatgattctaatggattttaaaaga-cttttttatcatgaaaaagtcttgtggtattcaatcaagattcttt 39087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University