View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5137-Insertion-5 (Length: 239)
Name: NF5137-Insertion-5
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5137-Insertion-5 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 19768084 - 19768304
Alignment:
| Q |
19 |
aagaagacttaagcttatatgtccaagacttaagcttatatgttcgaacatgagggagctttttcttcgtggctgtcggtgtgtgttacactgcattatg |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
19768084 |
aagaacacttaagcttatatgtccaagacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatg |
19768183 |
T |
|
| Q |
119 |
tgttttgtttatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcaatgtttctgtttagccattttgtgcgataggctttgttcat |
218 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19768184 |
tgttttgtttatgtaagtttttttcctctgctgctacttcaaattcaggtctgccttcaatgtttctgtttagccattttgtgcgataggctttgttcat |
19768283 |
T |
|
| Q |
219 |
tcaattttactctttgcctaa |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
19768284 |
tcaattttactctttgcctaa |
19768304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 29199652 - 29199815
Alignment:
| Q |
69 |
tgagggagctttttcttcgtggctgtcggtgtgtgttacactgcattatgtgttttgtttatgtaagnnnnnnncctccgctgctacttcaaattcaggt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
29199652 |
tgagggagctttttcttcgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagtttttttcct---ctgctacttcaaattcaggc |
29199748 |
T |
|
| Q |
169 |
ctgccttcaatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgc |
235 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |
|
|
| T |
29199749 |
ctgctttcgatgtttctgtttagccattttgtaggatatgctttgttcatttaattttactctttgc |
29199815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 12572461 - 12572312
Alignment:
| Q |
87 |
gtggctgtcggtgtgtgttacactgcattatgtgttttgtttatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcaatgtttctg |
186 |
Q |
| |
|
||||| ||| ||||||||||| | ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12572461 |
gtggcagtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctt |
12572362 |
T |
|
| Q |
187 |
tttagccattttgtgcgataggctttgttcattcaattttactctttgcc |
236 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||| |||||||| |
|
|
| T |
12572361 |
tttagccattttgtatcatatactttgttgattcaattttaatctttgcc |
12572312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 13548925 - 13548776
Alignment:
| Q |
87 |
gtggctgtcggtgtgtgttacactgcattatgtgttttgtttatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcaatgtttctg |
186 |
Q |
| |
|
||||| ||| ||||||||||| | ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13548925 |
gtggcagtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctt |
13548826 |
T |
|
| Q |
187 |
tttagccattttgtgcgataggctttgttcattcaattttactctttgcc |
236 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||| |||||||| |
|
|
| T |
13548825 |
tttagccattttgtatcatatactttgttgattcaattttaatctttgcc |
13548776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 22082777 - 22082997
Alignment:
| Q |
19 |
aagaagacttaagcttatatgtccaagacttaagcttatatgttcgaacatgagggagctttttcttcgtggctgtcggtgtgtgttacactgcattatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
22082777 |
aagaagacttaagcttatatgtccaagacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatg |
22082876 |
T |
|
| Q |
119 |
tgttttgtttatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcaatgtttctgtttagccattttgtgcgataggctttgttcat |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22082877 |
tgttttgtttatgtaagttttttttctccgctgctacttcaaattcaggtatgccttcaatgtttctgttttgccattttgtgcgataggctttgttcat |
22082976 |
T |
|
| Q |
219 |
tcaattttactctttgcctaa |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
22082977 |
tcaattttactctttgcctaa |
22082997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 37617198 - 37616983
Alignment:
| Q |
19 |
aagaagacttaagcttatatgtccaagacttaagcttatatgttcgaacatgagggagctttttcttcgtggctgtcggtgtgtgttacactgcattatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
37617198 |
aagaagacttaagcttatatgtccaagacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagcgtgtgttatactgcattatg |
37617099 |
T |
|
| Q |
119 |
tgttttgtttatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcaatgtttctgtttagccattttgtgcgataggctttgttcat |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37617098 |
tgttttgtttatgtaagtttttttcctccgctgctacttca-----aggtctgccttcaatgtttctgtttagccattttgtgcgataggcttttttcat |
37617004 |
T |
|
| Q |
219 |
tcaattttactctttgcctaa |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37617003 |
tcaattttactctttgcctaa |
37616983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 4351620 - 4351788
Alignment:
| Q |
69 |
tgagggagctttttctt-cgtggctgtcggtgtgtgttacactgcattatgtgttttgtttatgtaagnnnnnnncctccgctgctacttcaaattcagg |
167 |
Q |
| |
|
|||||||||||||| || |||||| ||| ||||||||||| | ||||| | ||||||||||||||||| ||| ||||||||||||||||| ||| |
|
|
| T |
4351620 |
tgagggagctttttttttcgtggcagtcagtgtgtgttacgcggcattgtttgttttgtttatgtaagttttgttcctgcgctgctacttcaaatttagg |
4351719 |
T |
|
| Q |
168 |
tctgccttcaatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcc |
236 |
Q |
| |
|
||||||||| || ||||| |||||||||||||| ||| ||||||| ||||||||||| |||||||| |
|
|
| T |
4351720 |
tctgccttcgatttttctttttagccattttgtatcatatactttgttgattcaattttaatctttgcc |
4351788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 226
Target Start/End: Complemental strand, 51389801 - 51389655
Alignment:
| Q |
80 |
tttcttcgtggctgtcggtgtgtgttacactgcattatgtgttttgtttatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcaat |
179 |
Q |
| |
|
|||||| |||||| ||||||| ||||| |||| || |||| ||||||||||||| || |||||||||||||| |||| ||||||||| | |
|
|
| T |
51389801 |
tttctttgtggctatcggtgtatgttatgctgcgttgtgtggtttgtttatgtaattttttttcccgcgctgctacttcaatttcaagtctgcctttggt |
51389702 |
T |
|
| Q |
180 |
gtttctgtttagccattttgtgcgataggctttgttcattcaatttt |
226 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
51389701 |
gtttctgtttagccgttttgtgcgatagactttgttcgttcaatttt |
51389655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 770338 - 770426
Alignment:
| Q |
148 |
gctgctacttcaaattcaggtctgccttcaatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaa |
239 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||||| || | |||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
770338 |
gctgctacttcaatttcaattctgcctttggtgtttctgtttagccgtt---tacgatagactttgtctattcaattttactatttgcctaa |
770426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 32662990 - 32663038
Alignment:
| Q |
185 |
tgtttagccattttgtgcgataggctttgttcattcaattttactcttt |
233 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
32662990 |
tgtttagccgttttgtacgatagagtttgttcattcagttttactcttt |
32663038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University