View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5137_high_1_N (Length: 365)
Name: NF5137_high_1_N
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5137_high_1_N |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 184 - 365
Target Start/End: Original strand, 43399394 - 43399568
Alignment:
| Q |
184 |
tccattatgaaaattcttactccgaattgatggcctataagaaaagaagcactgccagcagaattgttaattgctaagtgctttattaacttctttagat |
283 |
Q |
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| T |
43399394 |
tccattatgaaaattcttactccgaattgatggcctataagaaaagaagcactgccagcagaattgttaattgctaagtgct---ttagcttctttagat |
43399490 |
T |
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| Q |
284 |
tttcccctctcctcaaacaaatcatgattacacattcgataatgtatatatgttttgtaacaataggcttttaatggttgta |
365 |
Q |
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| T |
43399491 |
tttcccctctcctcaaacaaatcatgattacacattcgataatg----tatgttttgtaacaataggcttttaatggttgta |
43399568 |
T |
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Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 4031015 - 4030896
Alignment:
| Q |
1 |
aaatgaatgcattaataaagtcacaacagtttgagtttttaatctttgttttcttccttgcaaagattcttgagtactcttggattttcagttcagacaa |
100 |
Q |
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| T |
4031015 |
aaatgaatgcattaataaagtcacaacagtttgagtttttaatctttgttttcttccttgcaaagattcttgagtactcttggattttcagttcagacaa |
4030916 |
T |
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| Q |
101 |
aaatccgagtttctcactga |
120 |
Q |
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| T |
4030915 |
aaatccgagtttcttactga |
4030896 |
T |
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