View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5137_high_4 (Length: 353)
Name: NF5137_high_4
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5137_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 122 - 344
Target Start/End: Complemental strand, 32353409 - 32353188
Alignment:
| Q |
122 |
acaatttggagagcaacaacaaaacatgggtgacagttactcttttattggagtccagtaataaatttgcggcacatcacataactgaaaagtaagaggt |
221 |
Q |
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| T |
32353409 |
acaatttggagagcaacaacaaaacatgggcgacggttactcttttattgaagtccaataataaatttgcggcacatcacataactgaaaagtaagaggt |
32353310 |
T |
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| Q |
222 |
ggagttaaattgagagaccaatcattgatctccacataaattaagtaggatccaagatagaacaaaaacaagtgnnnnnnnntttgtttatcacctaaac |
321 |
Q |
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| T |
32353309 |
ggagttaaattgagagaccaatcattgatctccacataaattaagtaggatccaagatagaacaaaaacaagtg-aaaacaatttgtttatcacctaaac |
32353211 |
T |
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| Q |
322 |
caatttgctttattagtattatc |
344 |
Q |
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||||||||||||||||||||||| |
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| T |
32353210 |
caatttgctttattagtattatc |
32353188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 32353528 - 32353451
Alignment:
| Q |
2 |
tcaagcttgtcttatatccagttccccctccattagagtcaatttgtaaataaaagagatcagtgcaattcgacacag |
79 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32353528 |
tcaagcttgtcttatatccagttccccctccattagagtcaatttgtaaataaaagagatcagtgcaattcgacacag |
32353451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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