View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5137_high_6 (Length: 343)
Name: NF5137_high_6
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5137_high_6 |
 | |
|
| [»] scaffold0766 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 7975388 - 7975717
Alignment:
| Q |
1 |
aattcacctccctcttatgtgtttgaacccacttgttcaactccc-tctgattatattagtgctacactaataaggnnnnnnn-gcttcttttgaatata |
98 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7975388 |
aattcacctccctcttatgtgtttgaagccacttgttcaactcccctctaattatattagtgctacactaataaggttttttttgcttcttttgaatata |
7975487 |
T |
|
| Q |
99 |
cgacttcggaaattgtaagagactcggcaccattttagtcaatatatttattttaaatttagtcaatagatgacttaatttttgtactacaaatgatgga |
198 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
7975488 |
ggacttcggaaattgtaagagactcagcaccattttagtaaatatatttattttaaatttagtcaattgatgacttaatttttgtactacaa-----gga |
7975582 |
T |
|
| Q |
199 |
tatggggtgtggtaccatctggattgggatcacattcctatattgatgactttgcatgtcatcttttgcat-nnnnnnnctttgatttcaaaaatatgaa |
297 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7975583 |
tatggggtgtggtaccatctggactgggatcacattcctatattgatgactttgcatgtcatcttttgcataaaaaaaactttgatttcaaaaatatgaa |
7975682 |
T |
|
| Q |
298 |
attaggatttcaatagtctaaataatgtagaataa |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7975683 |
attaggatttcaatagtctaaataatgtagaataa |
7975717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12352851 - 12352891
Alignment:
| Q |
1 |
aattcacctccctcttatgtgtttgaacccacttgttcaac |
41 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
12352851 |
aattcacccccctcttatgtgtttgaagtcacttgttcaac |
12352891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0766 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3410 - 3450
Alignment:
| Q |
1 |
aattcacctccctcttatgtgtttgaacccacttgttcaac |
41 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
3410 |
aattcacccccctcttatgtgtttgaagtcacttgttcaac |
3450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University