View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5137_high_7 (Length: 335)
Name: NF5137_high_7
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5137_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 36147507 - 36147195
Alignment:
| Q |
1 |
aatgagagattttgaagatga---tgatggtgagaaagaagaggaagaggaaggtgaatttagtttagttgttgttgtggtggatgatttgtcttgtggg |
97 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36147507 |
aatgagagattttgaagaagaagatgatggtgagaaagaagaggaagaggaaggtgaatttagtttagttgttgttgtggtggatgatttgtcttgtggg |
36147408 |
T |
|
| Q |
98 |
aataatactaagagaagactcatgttgttgttgttggtggtggtggtgctgttatcctcgttggtagattttggctttgtcattgttgagagagaatcgt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36147407 |
aataatactaagagaagactcatgttgttgttgttggtggtggtggtgctgttatcttcgttggtagattttggctttgtcattgttgagagagaatcgt |
36147308 |
T |
|
| Q |
198 |
gggtgatgtttcttggtggtgatggttaatgggatgtgtgaaggagtggaaatgggaagtggtggggtatgaagtgaaaagaaggaacaaatgtagtaag |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36147307 |
gggtgatgtttcttggtggtgatggttaat-ggatgtgtgaaggagtggaaatggg-agtggtggggtatgaagtgaaaagaaggaacaaatgtagt-ag |
36147211 |
T |
|
| Q |
298 |
taaatatgtaattgtg |
313 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36147210 |
taaatatgtaattgtg |
36147195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University