View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5137_high_8 (Length: 331)
Name: NF5137_high_8
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5137_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 132 - 318
Target Start/End: Original strand, 1169368 - 1169561
Alignment:
| Q |
132 |
ctagcaagtgatgcacacttttttcttagtgttgttggttcaatcaattttcaactttcgttgaactcaaaaaacaagaatatcctctcaactccataac |
231 |
Q |
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| T |
1169368 |
ctagcaagtgatgcacacttttttcttagtgtt---ggttcaatcaattttcaacttttgttgaactcaaaaaacaagaatatcctctcaaatccataac |
1169464 |
T |
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| Q |
232 |
attgaattgaattgttatacgtacc----------ataaagaccactttgaaattagttgcaagttttcaactcattttgtttccgaaaagtttcac |
318 |
Q |
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| T |
1169465 |
attgaattgaattgttatacgtaccatgatagtttataaagaccactttgaaattagttgcaagttttcacctcattttgtttccgaaaagtttcac |
1169561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 1089473 - 1089505
Alignment:
| Q |
132 |
ctagcaagtgatgcacacttttttcttagtgtt |
164 |
Q |
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| T |
1089473 |
ctagcaagtgatgctcacttttttcttagtgtt |
1089505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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