View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5137_high_9 (Length: 320)

Name: NF5137_high_9
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5137_high_9
NF5137_high_9
[»] chr2 (29 HSPs)
chr2 (22-307)||(39233774-39234059)
chr2 (155-236)||(3834927-3835009)
chr2 (156-236)||(18234191-18234271)
chr2 (155-236)||(28784793-28784875)
chr2 (175-236)||(8873686-8873747)
chr2 (175-236)||(27352710-27352771)
chr2 (175-236)||(44075836-44075897)
chr2 (175-236)||(5429050-5429111)
chr2 (175-236)||(16011366-16011427)
chr2 (175-236)||(28783807-28783868)
chr2 (164-236)||(4069609-4069681)
chr2 (159-237)||(39475404-39475483)
chr2 (179-237)||(5429798-5429856)
chr2 (175-236)||(2075674-2075735)
chr2 (175-236)||(2076405-2076466)
chr2 (179-236)||(22387069-22387126)
chr2 (156-232)||(2215018-2215093)
chr2 (158-237)||(15994460-15994540)
chr2 (175-234)||(914890-914949)
chr2 (155-236)||(26240991-26241073)
chr2 (175-236)||(26882735-26882796)
chr2 (176-236)||(25456608-25456668)
chr2 (175-236)||(2238819-2238880)
chr2 (175-236)||(20651484-20651545)
chr2 (175-236)||(28916286-28916347)
chr2 (175-236)||(28917102-28917163)
chr2 (175-236)||(35908420-35908481)
chr2 (1-30)||(39233612-39233641)
chr2 (184-236)||(35907366-35907418)
[»] chr5 (20 HSPs)
chr5 (175-236)||(3099086-3099147)
chr5 (155-235)||(3098306-3098386)
chr5 (180-236)||(16899910-16899966)
chr5 (175-236)||(40366260-40366321)
chr5 (175-234)||(6895197-6895256)
chr5 (175-236)||(19432540-19432601)
chr5 (175-234)||(39084311-39084370)
chr5 (175-236)||(31559033-31559094)
chr5 (175-236)||(38914273-38914334)
chr5 (155-235)||(6894352-6894434)
chr5 (175-234)||(29096830-29096889)
chr5 (155-236)||(31558239-31558321)
chr5 (155-236)||(32694748-32694830)
chr5 (175-236)||(3779479-3779540)
chr5 (175-236)||(11120210-11120271)
chr5 (175-236)||(13911173-13911234)
chr5 (174-219)||(24052407-24052452)
chr5 (175-236)||(26710200-26710261)
chr5 (175-236)||(26979934-26979995)
chr5 (175-220)||(35989579-35989624)
[»] chr3 (33 HSPs)
chr3 (164-236)||(54280853-54280927)
chr3 (175-236)||(21103601-21103662)
chr3 (175-237)||(42121735-42121797)
chr3 (155-234)||(51218107-51218188)
chr3 (175-235)||(54295093-54295153)
chr3 (177-236)||(43631210-43631269)
chr3 (155-236)||(43656191-43656272)
chr3 (175-236)||(15951512-15951573)
chr3 (175-236)||(31090674-31090735)
chr3 (175-236)||(44706911-44706972)
chr3 (175-236)||(44707547-44707608)
chr3 (156-236)||(11058420-11058499)
chr3 (155-237)||(53427407-53427487)
chr3 (155-236)||(42489256-42489338)
chr3 (155-236)||(54281672-54281756)
chr3 (175-236)||(4996371-4996432)
chr3 (175-236)||(4996893-4996954)
chr3 (175-236)||(23485500-23485561)
chr3 (175-236)||(31091329-31091390)
chr3 (175-236)||(41780392-41780453)
chr3 (175-236)||(44878986-44879047)
chr3 (159-234)||(34985101-34985177)
chr3 (155-199)||(53841017-53841061)
chr3 (175-234)||(48045639-48045698)
chr3 (175-236)||(1984847-1984908)
chr3 (175-220)||(3990842-3990887)
chr3 (175-236)||(8482558-8482619)
chr3 (175-236)||(23143518-23143579)
chr3 (175-236)||(25166743-25166804)
chr3 (175-236)||(41354775-41354836)
chr3 (191-236)||(53427978-53428023)
chr3 (175-220)||(54600150-54600195)
chr3 (176-236)||(25165900-25165960)
[»] chr1 (28 HSPs)
chr1 (175-234)||(39841264-39841323)
chr1 (156-236)||(30856098-30856178)
chr1 (175-236)||(46047276-46047337)
chr1 (175-236)||(21081040-21081101)
chr1 (155-236)||(46728691-46728774)
chr1 (175-234)||(1743209-1743268)
chr1 (155-218)||(39025394-39025459)
chr1 (175-236)||(171437-171498)
chr1 (155-233)||(29373932-29374012)
chr1 (175-236)||(30856894-30856955)
chr1 (175-236)||(41147275-41147336)
chr1 (175-236)||(51465752-51465813)
chr1 (156-237)||(1743995-1744078)
chr1 (159-236)||(43380516-43380595)
chr1 (155-236)||(51466437-51466521)
chr1 (175-236)||(16878746-16878807)
chr1 (175-236)||(19439269-19439330)
chr1 (175-236)||(43379770-43379831)
chr1 (175-236)||(21080376-21080437)
chr1 (175-236)||(26252804-26252864)
chr1 (175-236)||(37910732-37910793)
chr1 (179-236)||(39840511-39840568)
chr1 (175-236)||(39958001-39958062)
chr1 (175-236)||(39958605-39958666)
chr1 (175-236)||(46727929-46727990)
chr1 (175-236)||(50126444-50126505)
chr1 (173-221)||(23551686-23551734)
chr1 (175-219)||(30984145-30984189)
[»] chr8 (26 HSPs)
chr8 (175-236)||(7601706-7601767)
chr8 (155-237)||(11596549-11596632)
chr8 (179-234)||(40784809-40784864)
chr8 (175-237)||(30427080-30427142)
chr8 (159-234)||(42093429-42093505)
chr8 (175-234)||(14445251-14445310)
chr8 (175-237)||(15224751-15224813)
chr8 (175-236)||(41723209-41723270)
chr8 (165-236)||(35627036-35627107)
chr8 (175-236)||(14446047-14446108)
chr8 (175-236)||(37727102-37727163)
chr8 (175-236)||(39528864-39528925)
chr8 (175-236)||(39529560-39529621)
chr8 (158-236)||(42095028-42095107)
chr8 (155-236)||(5339868-5339950)
chr8 (159-236)||(30136099-30136177)
chr8 (155-236)||(30136694-30136776)
chr8 (175-236)||(10499858-10499919)
chr8 (175-236)||(23404254-23404315)
chr8 (175-236)||(23404928-23404989)
chr8 (175-236)||(24700422-24700483)
chr8 (175-236)||(5340540-5340601)
chr8 (175-236)||(24701124-24701185)
chr8 (175-220)||(26636256-26636301)
chr8 (175-236)||(36187179-36187240)
chr8 (175-235)||(13388372-13388432)
[»] chr6 (11 HSPs)
chr6 (156-233)||(544343-544422)
chr6 (156-230)||(3184691-3184765)
chr6 (175-236)||(1175100-1175161)
chr6 (175-236)||(476922-476983)
chr6 (175-236)||(477647-477708)
chr6 (175-220)||(9699153-9699198)
chr6 (175-236)||(24051256-24051317)
chr6 (175-236)||(29979222-29979283)
chr6 (175-236)||(31170213-31170274)
chr6 (175-236)||(32403976-32404037)
chr6 (175-235)||(2812494-2812554)
[»] chr4 (26 HSPs)
chr4 (155-236)||(29145212-29145295)
chr4 (155-236)||(29144824-29144907)
chr4 (155-234)||(9170666-9170744)
chr4 (175-234)||(54110480-54110539)
chr4 (175-237)||(39263626-39263688)
chr4 (175-236)||(865416-865477)
chr4 (175-236)||(29517831-29517892)
chr4 (175-234)||(866269-866328)
chr4 (183-236)||(572176-572229)
chr4 (155-236)||(24573729-24573810)
chr4 (155-236)||(44876066-44876147)
chr4 (186-235)||(48614226-48614275)
chr4 (175-236)||(48615217-48615278)
chr4 (175-236)||(53535596-53535657)
chr4 (175-233)||(42712130-42712189)
chr4 (175-236)||(12658385-12658447)
chr4 (175-237)||(54109498-54109559)
chr4 (175-236)||(6056410-6056471)
chr4 (175-236)||(38657828-38657889)
chr4 (175-236)||(51162909-51162970)
chr4 (175-231)||(11701680-11701736)
chr4 (182-236)||(6711118-6711172)
chr4 (175-237)||(50064669-50064731)
chr4 (175-236)||(15807657-15807718)
chr4 (175-236)||(47864490-47864551)
chr4 (175-235)||(38658498-38658558)
[»] chr7 (24 HSPs)
chr7 (158-236)||(26828766-26828843)
chr7 (155-234)||(14419392-14419473)
chr7 (175-236)||(6822605-6822666)
chr7 (175-236)||(21985575-21985636)
chr7 (183-236)||(41345436-41345489)
chr7 (175-237)||(41567920-41567982)
chr7 (175-236)||(11337708-11337769)
chr7 (175-236)||(17995850-17995911)
chr7 (183-236)||(37796598-37796651)
chr7 (175-221)||(21984874-21984920)
chr7 (155-236)||(40193861-40193943)
chr7 (175-236)||(789299-789360)
chr7 (191-236)||(26829629-26829674)
chr7 (175-236)||(32497001-32497062)
chr7 (175-236)||(42276530-42276591)
chr7 (175-236)||(47723476-47723536)
chr7 (186-234)||(46196746-46196794)
chr7 (175-236)||(7945334-7945395)
chr7 (175-236)||(23966316-23966377)
chr7 (175-236)||(26585475-26585536)
chr7 (175-236)||(28762976-28763037)
chr7 (179-236)||(34458851-34458908)
chr7 (175-236)||(35088374-35088435)
chr7 (155-234)||(16779769-16779849)
[»] scaffold0785 (1 HSPs)
scaffold0785 (175-237)||(1568-1630)
[»] scaffold0014 (1 HSPs)
scaffold0014 (155-236)||(135484-135566)
[»] scaffold0187 (1 HSPs)
scaffold0187 (175-236)||(28284-28345)
[»] scaffold0141 (2 HSPs)
scaffold0141 (175-236)||(10307-10368)
scaffold0141 (175-220)||(11135-11180)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 39233774 - 39234059
Alignment:
Q  22 aataataaaattgtaaccaattgtcattgattgttgcataatacagcatgattatatgctaagaatgtgttatcgtgagatgaagataatgctgaatagt 121  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39233774 aataataaaattgtaaccaattgtcattgattgttgcataaaacagtatgattatatgctaagaatgtgttatcgtgagatgaagatcatgctgaatagt 39233873  T
Q  122 g-gattcggatatcattttcaaacaa--nnnnnnnncagggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacaggga 218  Q
    | | || ||  | |||||||||||||          |||||||| ||||| || | ||||||| | |||||||||| |||| || |||||||||||||||    
T  39233874 gaggttagg-gaccattttcaaacaatttttttttgcagggatgtatttc-aatttttttttatatggacgaaaatcaaaattgaaccaaattacaggga 39233971  T
Q  219 cgactatcatatttaagctnnnnnnntaataatatttcagcagcctatcatttatgttatttaaaatatagtattgacaatttgcagta 307  Q
    ||| ||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39233972 cgattatcatatttaagc-caaaaaataataatatttccgcagcctatcatttatgttatttaaaatatagtattgacaatttgcagta 39234059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 3835009 - 3834927
Alignment:
Q  155 cagggatgcatttcaaagtatttttt-acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  3835009 cagggatgtatttcaaagtttttttttacagggacgaaaatcaaaactagaccaaattacagggacgattatcatatttaagc 3834927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 18234271 - 18234191
Alignment:
Q  156 agggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||| |||||||  | |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||    
T  18234271 agggatgtatttcaattttttttttacagggacgaaaatcaaaactggtccaaattacagagacgaatatcatatttaagc 18234191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 28784793 - 28784875
Alignment:
Q  155 cagggatgcatttcaaagtatttt-ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||||| |||| |||||||||||||||| |||||| ||||||||||||| ||||| ||| ||||||||||    
T  28784793 cagggatgtatttcaaagtttttttttacagggacgaaaatcaaaacttgaccaaattacagagacgattataatatttaagc 28784875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 8873747 - 8873686
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||||||||| || |||||||||||||||||  |||||||||||||    
T  8873747 ttttttacagggacgaaaattaaaacgggtccaaattacagggacgaaaatcatatttaagc 8873686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 27352710 - 27352771
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  27352710 ttttttacagggacgaaaattcaaactggatcaaattatagggacgattatcatatttaagc 27352771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 44075897 - 44075836
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  44075897 ttttttatagagacgaaaatcaaaactggaccaaattacagggacgattatcatatttaagc 44075836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 5429111 - 5429050
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| | | ||||||||||||    
T  5429111 ttttttacagggacgaaaatcaaaactgaaccaaattacagggacaattttcatatttaagc 5429050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 16011427 - 16011366
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||||| |||||||| | |||| ||||||||||||||    
T  16011427 ttttttacagggacgaaaatcaaaactggactaaattacaagaacgattatcatatttaagc 16011366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 28783868 - 28783807
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| ||||||||||||||| ||||| |||||||| |||||| ||||||||||||||    
T  28783868 ttttttacatggacgaaaattaaaattggactaaattacatggacgattatcatatttaagc 28783807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 4069681 - 4069609
Alignment:
Q  164 atttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| | |||||||||| |||||||||||||||||  |||||||| |||||| | ||||||||||||||    
T  4069681 atttcaaatttttttttacagagacgaaaattaaaactgacccaaattatagggacaattatcatatttaagc 4069609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 39475483 - 39475404
Alignment:
Q  159 gatgcatttcaaagtattttt-tacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    |||| |||||||||| ||||| |||||| |||||||| ||||||||| |||||||||| ||||| ||| |||||||||||    
T  39475483 gatgtatttcaaagtttttttctacaggaacgaaaatcaaaactggatcaaattacagagacgattattatatttaagct 39475404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 5429798 - 5429856
Alignment:
Q  179 ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    |||| ||||||||||| |||| |||||||||||| |||||||| |||||||||||||||    
T  5429798 ttactgggacgaaaatcaaaattggaccaaattatagggacgattatcatatttaagct 5429856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 2075735 - 2075674
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||| |||||||||||| |||||||  | ||||||||||||||| ||||||||||||||    
T  2075735 ttttttatagggacgaaaatcaaaactgacctaaattacagggacgattatcatatttaagc 2075674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 2076405 - 2076466
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||| | ||||||||| ||||    
T  2076405 ttttttacaaggacgaaaatcaaaactggaccaaattatagggacaattatcatattaaagc 2076466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 22387069 - 22387126
Alignment:
Q  179 ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||||||||||||  | |||||||||||||||||  |||||||||||||    
T  22387069 ttacagggacgaaaattaaaacgagtccaaattacagggacgaaaatcatatttaagc 22387126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 2215018 - 2215093
Alignment:
Q  156 agggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatattt 232  Q
    ||||||| |||||||| | |||||| |||| |||||||| |||||||| ||||||||||||||||| ||| ||||||    
T  2215018 agggatgtatttcaaaattttttttgcagg-acgaaaatcaaaactggcccaaattacagggacgattattatattt 2215093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 15994460 - 15994540
Alignment:
Q  158 ggatgcatttcaaagtatttt-ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    ||||| |||||||||| |||| |||||||||||||||| |||||||   ||||||| | |||||| |||||||||||||||    
T  15994460 ggatgtatttcaaagtttttttttacagggacgaaaatcaaaactgactcaaattatatggacgattatcatatttaagct 15994540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 914890 - 914949
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||| ||||| |||||||||||||| | | ||||||||||||||| ||||||||||||    
T  914890 ttttttgcagggtcgaaaattaaaactagccaaaattacagggacgattatcatatttaa 914949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 26240991 - 26241073
Alignment:
Q  155 cagggatgcatttcaaagtatttt-ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| | |||||||| |||| |||||||||||||| | ||||| |  ||||||||||||||| | ||||||||||||||    
T  26240991 cagggatgtaattcaaagtttttttttacagggacgaaattcaaaaccgacccaaattacagggactaatatcatatttaagc 26241073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 26882735 - 26882796
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| |  |||||||||| ||||||  |||||||||||||    
T  26882735 ttttttacagggacgaaaatcaaaacggacccaaattacatggacgaaaatcatatttaagc 26882796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 25456608 - 25456668
Alignment:
Q  176 tttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||||||| | |||||||| |||| |||||  ||||| ||||||||||||||    
T  25456608 tttttacagggacgaaattgaaaactggtccaagttacactgacgattatcatatttaagc 25456668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 2238819 - 2238880
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  2238819 ttttttacagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaagc 2238880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 20651545 - 20651484
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | ||||||||   | ||||||||||| | ||||||||||||||    
T  20651545 ttttttacagggacgaaattcaaaactggcttatattacagggactaatatcatatttaagc 20651484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 28916347 - 28916286
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  28916347 ttttttacagggacgaaaatcaaaattcgtccaaattacagggacggtttgcatatttaagc 28916286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 28917102 - 28917163
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  28917102 ttttttacagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaagc 28917163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 35908420 - 35908481
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| |||||||||| |||||| | |||||||||| |||| | | ||||||||||||    
T  35908420 ttttttacaaggacgaaaatcaaaactcgcccaaattacatggacaaatgtcatatttaagc 35908481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 39233612 - 39233641
Alignment:
Q  1 cagagaacaaccaggcggcaaaataataaa 30  Q
    ||||||||||||||||||||||||||||||    
T  39233612 cagagaacaaccaggcggcaaaataataaa 39233641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 35907418 - 35907366
Alignment:
Q  184 gggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||| |||||| |||||| ||||||||||||||||| | ||||||||| ||||    
T  35907418 gggatgaaaatcaaaactagaccaaattacagggacaattatcatattgaagc 35907366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 3099086 - 3099147
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  3099086 ttttttacagggacgaaaattaaaactggaccaaattacatggacgattatcatatttaagc 3099147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 3098386 - 3098306
Alignment:
Q  155 cagggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaag 235  Q
    |||||||| |||||||||| |||||||||| ||||||||| |||||||  | ||||||||||||||| |||||||||||||    
T  3098386 cagggatgtatttcaaagttttttttacagagacgaaaatcaaaactgacctaaattacagggacgattatcatatttaag 3098306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 16899966 - 16899910
Alignment:
Q  180 tacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  16899966 tacagggacgaaaatcaaaactggaccaaattacagggacgattatcatatttaagc 16899910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 40366321 - 40366260
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  40366321 ttttttacagggacgaaaatcaaaactgacccaaattacagggacgattatcatatttaagc 40366260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 6895197 - 6895256
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  6895197 ttttttactgggacgaaaatcaaaactggaccaaattacaaggacgattatcatatttaa 6895256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 19432540 - 19432601
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||| ||||| ||||||| ||||||||||||| |||| ||||||||||||||    
T  19432540 ttttttacagggacaaaaatcaaaactgaaccaaattacaggaacgattatcatatttaagc 19432601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 39084311 - 39084370
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||||||||||||||||| |||| ||| |||||||| |||||||| ||||||||||||    
T  39084311 ttttttacagggacgaaaatcaaaattggcccaaattagagggacgattatcatatttaa 39084370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 31559033 - 31559094
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||| |||||||||||| |||||||| | ||||||||| ||||| ||||||||||||||    
T  31559033 ttttttatagggacgaaaatcaaaactggccaaaattacagtgacgattatcatatttaagc 31559094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 38914273 - 38914334
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||| | |||||| ||||||||  |||||||||||||    
T  38914273 ttttttacagggacgaaaatcaaaactggtctaaattatagggacgaaaatcatatttaagc 38914334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 6894434 - 6894352
Alignment:
Q  155 cagggatgcatttcaaagtatttttt--acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaag 235  Q
    |||||||| |||||||||| |||||   |||||||||||||| |||||||| | |||||| ||||| || |||||||||||||    
T  6894434 cagggatgtatttcaaagtttttttataacagggacgaaaatcaaaactggcctaaattagagggatgattatcatatttaag 6894352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 29096889 - 29096830
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||| | ||||||||||    
T  29096889 ttttttacaggaacaaaaatcaaaactggaccaaattacatggacgattttcatatttaa 29096830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 31558321 - 31558239
Alignment:
Q  155 cagggatgcatttcaaagtattt-tttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||  ||||||||| ||| |||||| |||||||||| |||||||   |||||||||| ||||| ||||||||||||||    
T  31558321 cagggatgtgtttcaaagtttttgtttacatggacgaaaatcaaaactgactcaaattacagtgacgattatcatatttaagc 31558239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 32694748 - 32694830
Alignment:
Q  155 cagggatgcatttcaaagtatttttt-acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| ||||||| || |||||| | || ||||||||| |||||||| ||||| ||||||| ||| ||||||||||||||    
T  32694748 cagggatgtatttcaatgtttttttttaaagagacgaaaatcaaaactggcccaaactacaggggcgattatcatatttaagc 32694830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 3779479 - 3779540
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | || ||||||||  |||||| ||||||||||||||    
T  3779479 ttttttacagggacgaaaatcaaaatttgatcaaattactaggacgattatcatatttaagc 3779540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 11120271 - 11120210
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || ||||||||||| || ||  |||||||||||||    
T  11120271 ttttttacagggacgaaaatcaaaacgggcccaaattacagagatgaaaatcatatttaagc 11120210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 13911234 - 13911173
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | ||||| |  |||||||||| |||| | ||||||||||||||    
T  13911234 ttttttacagggacgaaattcaaaaccgacccaaattacatggactaatatcatatttaagc 13911173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 24052407 - 24052452
Alignment:
Q  174 attttttacagggacgaaaattaaaactggaccaaattacagggac 219  Q
    ||||||||||||||||||||| |||||  | |||||||||||||||    
T  24052407 attttttacagggacgaaaatcaaaacgcgtccaaattacagggac 24052452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 26710261 - 26710200
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || ||||||||| |||| ||  || ||||||||||    
T  26710261 ttttttacagggacgaaaatcaaaacgggcccaaattactgggatgaaaatgatatttaagc 26710200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 26979995 - 26979934
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || ||||||||| |||| ||  || ||||||||||    
T  26979995 ttttttacagggacgaaaatcaaaacgggcccaaattactgggatgaaaatgatatttaagc 26979934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 35989579 - 35989624
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacg 220  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||    
T  35989579 ttttttacagggacgaaaatcaaaattagcccaaattacagggacg 35989624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 54280927 - 54280853
Alignment:
Q  164 atttcaaagtatttttta--cagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  54280927 atttcaaagttttttttatacagggacgaaaatcaaaactggaccaaattacagggacgattatcatatttaagc 54280853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 21103601 - 21103662
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||  |||||||||||||    
T  21103601 ttttttacagggacgaaaatcaaaactggtccaaattacagggacgaaaatcatatttaagc 21103662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 42121735 - 42121797
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    ||||||||| | ||||||||||||||||| |||||||| |||||||| |||||||||||||||    
T  42121735 ttttttacatgaacgaaaattaaaactggtccaaattatagggacgattatcatatttaagct 42121797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 51218188 - 51218107
Alignment:
Q  155 cagggatgcatttcaaagtatttttt--acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||||| |||||||||| ||||||  ||||||||||| || ||||||||||||||||| |||||| | ||||||||||||    
T  51218188 cagggatgtatttcaaagttttttttttacagggacgaatatcaaaactggaccaaattatagggacaattatcatatttaa 51218107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 54295093 - 54295153
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaag 235  Q
    |||||||||||||||||||| |||||||  |||||||||| |||||| |||||||||||||    
T  54295093 ttttttacagggacgaaaatcaaaactgacccaaattacatggacgattatcatatttaag 54295153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 43631210 - 43631269
Alignment:
Q  177 ttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| |||||||| ||||||||||||||| ||| |||||| ||||||||||||||    
T  43631210 ttttacaggaacgaaaatcaaaactggaccaaatcacatggacgattatcatatttaagc 43631269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 43656191 - 43656272
Alignment:
Q  155 cagggatgcatttcaaagtatttttt-acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||||| |||||| ||||| |||||||| |||||||  |||||||||| |||||| ||||||||||||||    
T  43656191 cagggatgtatttcaaagtttttttttacagg-acgaaaatcaaaactgtcccaaattacaaggacgattatcatatttaagc 43656272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 15951512 - 15951573
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||  || ||||||||||    
T  15951512 ttttttacagggacgaaaatcaaaacgggcccaaattacagggacgaaaatgatatttaagc 15951573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 31090735 - 31090674
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||| |||||||||||| ||||| || |||||||||||||||||  |||||||||||||    
T  31090735 ttttttatagggacgaaaatcaaaacgggtccaaattacagggacgaaaatcatatttaagc 31090674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 44706972 - 44706911
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| |  |||||||||||||||||  |||||||||||||    
T  44706972 ttttttacagggacgaaaatcaaaacggacccaaattacagggacgaaaatcatatttaagc 44706911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 44707547 - 44707608
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||  || |||||||||||||||||  |||||||||||||    
T  44707547 ttttttacagggacgaaaatcaaaatgggtccaaattacagggacgaaaatcatatttaagc 44707608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 11058420 - 11058499
Alignment:
Q  156 agggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||  ||||||||| ||||||||||||||| |||| |||||||  | |||||||||||||||  |||||||||||||    
T  11058420 agggatgtttttcaaagt-ttttttacagggacggaaatcaaaactgatctaaattacagggacgaaaatcatatttaagc 11058499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 53427487 - 53427407
Alignment:
Q  155 cagggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    |||||||| |||||||  | |||||||||  || |||||| ||||||| || |||||||||| ||||||||||||||||||||    
T  53427487 cagggatgtatttcaa--ttttttttacatagatgaaaatcaaaactgaactaaattacaggaacgactatcatatttaagct 53427407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 42489256 - 42489338
Alignment:
Q  155 cagggatgcatttcaaagtatttttt-acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||  |||||||||| |||||| || ||||||||||| |||||||  |||||||||| |||| | ||||||||||||||    
T  42489256 cagggatatatttcaaagtttttttttacggggacgaaaatcaaaactgacccaaattacaaggacaattatcatatttaagc 42489338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 54281672 - 54281756
Alignment:
Q  155 cagggatgcatttcaaagtatttt---ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||||| ||||   |||||||||||||||| |||  ||| |||||| ||||| |||| ||||||||||||||    
T  54281672 cagggatgtatttcaaagtttttttttttacagggacgaaaatcaaatttggcccaaataacaggaacgattatcatatttaagc 54281756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 4996432 - 4996371
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | |||||||  |||||||||||| || | ||||||||||||||    
T  4996432 ttttttacagggacgaaattcaaaactgacccaaattacaggaactaatatcatatttaagc 4996371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 4996893 - 4996954
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||| ||||||||| |||||  | |||||||||||||||||  |||||||||||||    
T  4996893 ttttttacagtgacgaaaatcaaaacgagcccaaattacagggacgaaaatcatatttaagc 4996954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 23485561 - 23485500
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | ||||| |  ||||||||||||||| | ||||||||||||||    
T  23485561 ttttttacagggacgaaattcaaaaccgacccaaattacagggactaatatcatatttaagc 23485500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 31091329 - 31091390
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || ||||||||||  |||||  |||||||||||||    
T  31091329 ttttttacagggacgaaaatcaaaacgggcccaaattacaaagacgaaaatcatatttaagc 31091390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 41780392 - 41780453
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||| ||||||||| ||||| ||||| || |||||||||||||||||  |||||||||||||    
T  41780392 ttttctacagggacaaaaatcaaaacgggtccaaattacagggacgaaaatcatatttaagc 41780453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 44878986 - 44879047
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | ||||| |  ||||||||||||||| | ||||||||||||||    
T  44878986 ttttttacagggacgaaattcaaaaccgacccaaattacagggactaatatcatatttaagc 44879047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 34985177 - 34985101
Alignment:
Q  159 gatgcatttcaaagtatttttt-acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||| |||||||||| |||||| ||| |||||||||| |||| ||||||||||||||  ||||| ||| ||||||||    
T  34985177 gatgtatttcaaagtttttttttacatggacgaaaatcaaaattggaccaaattacacagacgattattatatttaa 34985101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 53841017 - 53841061
Alignment:
Q  155 cagggatgcatttcaaagtattttttacagggacgaaaattaaaa 199  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||    
T  53841017 cagggatgcatttcaaagttttttttacagggactaaaatcaaaa 53841061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 48045639 - 48045698
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||||| ||||||| ||| |||||  |||||||||||||| |||| ||||||||||||    
T  48045639 ttttttacggggacgacaatcaaaacgagaccaaattacaggaacgattatcatatttaa 48045698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 1984908 - 1984847
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| |||||||||| ||||  || ||||||||||||||||| |  |||||||||||    
T  1984908 ttttttacaaggacgaaaatcaaaatgggcccaaattacagggacgaattgcatatttaagc 1984847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 3990842 - 3990887
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacg 220  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||    
T  3990842 ttttttacagggacgaaaatcaaaattagcccaaattacagggacg 3990887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 8482558 - 8482619
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||| |||| | ||||| |  ||||||||||||||| | ||||||||||||||    
T  8482558 ttttttacagggaggaaattcaaaaccgacccaaattacagggactaatatcatatttaagc 8482619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 23143518 - 23143579
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | ||||| |  ||||||||||||||| |  |||||||||||||    
T  23143518 ttttttacagggacgaaattcaaaaccgacccaaattacagggactaaaatcatatttaagc 23143579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 25166743 - 25166804
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  25166743 ttttttacagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaagc 25166804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 41354775 - 41354836
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||||   ||| |||||||||||||| |||| | |||| ||||||||||||||    
T  41354775 ttttttacagggacatgaatcaaaactggaccaaagtacatgaacgattatcatatttaagc 41354836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 53427978 - 53428023
Alignment:
Q  191 aaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||| ||||||||||||||||||||  |||| ||||||||||||||    
T  53427978 aaatcaaaactggaccaaattacagaaacgattatcatatttaagc 53428023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 54600195 - 54600150
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacg 220  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||    
T  54600195 ttttttacagggacgaaaatcaaaattagcccaaattacagggacg 54600150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 25165960 - 25165900
Alignment:
Q  176 tttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  25165960 tttttacagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaagc 25165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 39841264 - 39841323
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  39841264 ttttttacagggacgaaaatcaaaactggaccaaattacagggacgattatcatatttaa 39841323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 30856178 - 30856098
Alignment:
Q  156 agggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||||| |||||||| | |||||| ||||| ||||||||    
T  30856178 agggatgtatttcaaagttttttttacagtgacgaaaattaaaactggcccaaattataaggacgattatcaaatttaagc 30856098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 46047276 - 46047337
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||    
T  46047276 ttttttacagggacgaaaattaaaattggactaaattacatggacgattatcatatttaagc 46047337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 21081040 - 21081101
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| |||||||||  ||||||||||||||| | ||||||||||||||    
T  21081040 ttttttacagggacgaaatttaaaactgacccaaattacagggactaatatcatatttaagc 21081101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 46728691 - 46728774
Alignment:
Q  155 cagggatgcatttcaaagtatttttta--cagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||||| |||||||  ||||||||||||| |||||||  ||||| ||||| ||||| ||||||||||||||    
T  46728691 cagggatgtatttcaaagttttttttatacagggacgaaaatcaaaactgacccaaactacagtgacgattatcatatttaagc 46728774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 1743268 - 1743209
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||||||||||||||||| ||||||| || |||||| |||||||| ||||||||||||    
T  1743268 ttttttacagggacgaaaatcaaaactgaactaaattatagggacgattatcatatttaa 1743209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 39025459 - 39025394
Alignment:
Q  155 cagggatgcatttcaaagtatttttt--acagggacgaaaattaaaactggaccaaattacaggga 218  Q
    |||||||| |||||||||| ||||||  |||||||||||||| |||| ||||||||||||||||||    
T  39025459 cagggatgtatttcaaagttttttttttacagggacgaaaatcaaaattggaccaaattacaggga 39025394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 171437 - 171498
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||   |||||||||| ||||| ||||||||||||||    
T  171437 ttttttacagggacgaaaatcaaaactgactcaaattacagagacgattatcatatttaagc 171498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 29373932 - 29374012
Alignment:
Q  155 cagggatgcatttcaaagtatttttt--acagggacgaaaattaaaactggaccaaattacagggacgactatcatattta 233  Q
    |||||||| |||||||||| ||||||  |||| ||||||||| |||||||  |||||||||| |||||| |||||||||||    
T  29373932 cagggatgtatttcaaagttttttttttacagtgacgaaaatcaaaactgatccaaattacaaggacgattatcatattta 29374012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 30856894 - 30856955
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||| |||||||| |||||| |||||||||| ||||| || ||||||||||||||    
T  30856894 ttttttacaggaacgaaaatcaaaactagaccaaattatagggaagattatcatatttaagc 30856955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 41147275 - 41147336
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| || |||||||| |||||||| |||||||||| |||||| ||||||||||||||    
T  41147275 ttttttaccggaacgaaaatcaaaactggcccaaattacaaggacgattatcatatttaagc 41147336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 51465813 - 51465752
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||| ||||||||||||| |||||||  ||||||||||||||| | ||||||||||||||    
T  51465813 ttttttgcagggacgaaaatcaaaactgatccaaattacagggactattatcatatttaagc 51465752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 1743995 - 1744078
Alignment:
Q  156 agggatgcatttcaaagtattt--tttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    ||||||| |||||||||| |||  |||||||| |||||||| |||||||| ||||||||||  || || |||||||||||||||    
T  1743995 agggatgtatttcaaagtttttcttttacaggaacgaaaatcaaaactggcccaaattacatagatgattatcatatttaagct 1744078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 43380516 - 43380595
Alignment:
Q  159 gatgcatttcaaagtattttt--tacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||| |||||||||| |||||  | ||| ||||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  43380516 gatgtatttcaaagtttttttgttgcagagacgaaaatcaaaactgatccaaattacagggacgattatcatatttaagc 43380595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 51466437 - 51466521
Alignment:
Q  155 cagggatgcatttcaaagtatttt---ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||||| ||||   |||||||||||||||| |||||||  | |||||| | |||||| ||||||||||||||    
T  51466437 cagggatgtatttcaaagtttttttttttacagggacgaaaatcaaaactgacctaaattataaggacgattatcatatttaagc 51466521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 16878807 - 16878746
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| ||||||||||| ||||| ||  ||||||||||||||||  |||||||||||||    
T  16878807 ttttttactgggacgaaaatcaaaacgggttcaaattacagggacgaaaatcatatttaagc 16878746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 19439269 - 19439330
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || |||||||||| | ||||  |||||||||||||    
T  19439269 ttttttacagggacgaaaatcaaaacgggcccaaattacaagaacgaaaatcatatttaagc 19439330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 43379831 - 43379770
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||    ||||||||||||||  ||||||||||||||    
T  43379831 ttttttacagggacgaaaatcaaaactgtcaaaaattacagggacgtttatcatatttaagc 43379770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 21080437 - 21080376
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| ||| |||||| ||||| |  |||||||||||||||||  |||||||||||||    
T  21080437 ttttttacaaggatgaaaatcaaaacggacccaaattacagggacgaaaatcatatttaagc 21080376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 26252804 - 26252864
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||   ||||||||| |||| | ||||||||||||||    
T  26252804 ttttttacagggacgaaaatcaaaactgactcaaattaca-ggacaattatcatatttaagc 26252864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 37910732 - 37910793
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| |  ||||||||| |||||||  || ||||||||||    
T  37910732 ttttttacagggacgaaaatcaaaacggatccaaattacggggacgaaaatgatatttaagc 37910793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 39840568 - 39840511
Alignment:
Q  179 ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||| |||||||  | |||||||| ||| || ||||||||||||||    
T  39840568 ttacagggacgaaaatcaaaactgaccaaaattacatggatgattatcatatttaagc 39840511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 39958062 - 39958001
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||| |||||||||| | ||||| |  ||||||||||||||| | ||||||||||||||    
T  39958062 ttttttatagggacgaaattcaaaaccgacccaaattacagggactaatatcatatttaagc 39958001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 39958605 - 39958666
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| |||||||||| ||||| || ||||||||||| |||||  || ||||||||||    
T  39958605 ttttttacaaggacgaaaatcaaaacgggcccaaattacagagacgaaaatgatatttaagc 39958666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 46727990 - 46727929
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||| ||||||||||||||| |||||||  ||||||| ||| ||| | ||||||||||||||    
T  46727990 ttttatacagggacgaaaatcaaaactgtcccaaattccagtgactattatcatatttaagc 46727929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 50126444 - 50126505
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | ||||| |  |||||||||| |||| | ||||||||||||||    
T  50126444 ttttttacagggacgaaattcaaaaccgacccaaattacatggactaatatcatatttaagc 50126505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 23551734 - 23551686
Alignment:
Q  173 tattttttacagggacgaaaattaaaactggaccaaattacagggacga 221  Q
    ||||||||||| |||||||||| |||||  | |||||||||||||||||    
T  23551734 tattttttacaaggacgaaaatcaaaacgcgtccaaattacagggacga 23551686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 30984145 - 30984189
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggac 219  Q
    |||||||||||||||||||| |||||  | |||||||||||||||    
T  30984145 ttttttacagggacgaaaatcaaaacgcgtccaaattacagggac 30984189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 7601706 - 7601767
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  7601706 ttttttacagggacgaaaatcaaaactggcccaaattacagggacgattatcatatttaagc 7601767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 11596549 - 11596632
Alignment:
Q  155 cagggatgcatttcaaagtatttt-ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    |||||||| |||||||||| |||| |||||||||||||||| |||||||| ||||||||| ||||||| | |||||||||||||    
T  11596549 cagggatgtatttcaaagtttttttttacagggacgaaaatcaaaactggtccaaattactgggacgattctcatatttaagct 11596632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 40784864 - 40784809
Alignment:
Q  179 ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  40784864 ttacagggacgaaaatcaaaactggaccaaattacagggacgattatcatatttaa 40784809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 30427142 - 30427080
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  30427142 ttttttacaaggacgaaaataaaaactgaaccaaattacagggacgattatcatatttaagct 30427080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 42093505 - 42093429
Alignment:
Q  159 gatgcatttcaaagtatttttt-acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||| |||||||||| |||||| |||||||||||||| ||||||||  |||||||||||||||| ||||||||||||    
T  42093505 gatgtatttcaaagtttttttttacagggacgaaaatcaaaactggttcaaattacagggacgattatcatatttaa 42093429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 14445310 - 14445251
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||| ||||||||||||    
T  14445310 ttttttacagggacgaaaattaaaacttgaccaaattacaaagacgattatcatatttaa 14445251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 15224813 - 15224751
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||  ||||||||||||||    
T  15224813 ttttttacagggacgaaaatcaaaacgggcccaaattacagggacgaaaatcatatttaagct 15224751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 41723270 - 41723209
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||| ||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||    
T  41723270 ttttttatagggacggaaatcaaaacttgaccaaattacagggacgattatcatatttaagc 41723209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 35627036 - 35627107
Alignment:
Q  165 tttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| ||||||||||| |||||||| |||||||  |||||||||||||||||  ||||| |||||||    
T  35627036 tttcaaagttttttttacaggaacgaaaatcaaaactgatccaaattacagggacgaaaatcatgtttaagc 35627107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 14446047 - 14446108
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||| |||||| |||| ||| ||||||||||||||||| ||||||||||||||    
T  14446047 ttttttacggggatgaaaatcaaaattggcccaaattacagggacgattatcatatttaagc 14446108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 37727163 - 37727102
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||| | |||||||| ||||||  |||||||||||||    
T  37727163 ttttttacagggacgaaaatcaaaactggtctaaattacatggacgaaaatcatatttaagc 37727102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 39528925 - 39528864
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||||  |||||||||||||    
T  39528925 ttttttacagggacaaaaatcaaaactgacccaaattacagggacgaaaatcatatttaagc 39528864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 39529560 - 39529621
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||  ||||||||||||||| |  |||||||||||||    
T  39529560 ttttttacagggacgaaaatcaaaactgatccaaattacagggacaaaaatcatatttaagc 39529621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 42095028 - 42095107
Alignment:
Q  158 ggatgcatttcaaagtatttttt-acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||| |||||||||| |||||| | || |||||||||||||||| || |||||||||| ||||| ||| ||||||||||    
T  42095028 ggatgtatttcaaagtttttttttatagagacgaaaattaaaactagatcaaattacagagacgattattatatttaagc 42095107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 5339950 - 5339868
Alignment:
Q  155 cagggatgcatttcaaagtatttttt-acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| | |||||||| |||||| |||||||||||| | ||||| |  ||||||||||||||| | ||||||||||||||    
T  5339950 cagggatgtaattcaaagtttttttttacagggacgaaattcaaaaccgacccaaattacagggactaatatcatatttaagc 5339868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 30136177 - 30136099
Alignment:
Q  159 gatgcatttcaaagtatttttt-acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||| |||||||||| |||||| |||||||||||||| | || | || |||||||||| ||||| ||||||||||||||    
T  30136177 gatgtatttcaaagtttttttttacagggacgaaaatcataatttgatcaaattacagagacgattatcatatttaagc 30136099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 30136694 - 30136776
Alignment:
Q  155 cagggatgcatttcaaagtatttt-ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||||| |||| |||||||||  ||||| |||| |||  ||||||||| |||||| ||||||||||||||    
T  30136694 cagggatgtatttcaaagtttttttttacagggataaaaatcaaaattggttcaaattacatggacgattatcatatttaagc 30136776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 10499919 - 10499858
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | ||||| |  ||||||||||||||| | ||||||||||||||    
T  10499919 ttttttacagggacgaaattcaaaaccgacccaaattacagggactaatatcatatttaagc 10499858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 23404315 - 23404254
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||| |||||| ||||  || |||||||||||||||||  |||||||||||||    
T  23404315 ttttttacagggaggaaaatgaaaatgggtccaaattacagggacgaaaatcatatttaagc 23404254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 23404928 - 23404989
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||| |||||||| ||||| || | |||||||||||||||  |||||||||||||    
T  23404928 ttttttacaggaacgaaaatcaaaacgggccaaaattacagggacgaaaatcatatttaagc 23404989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 24700483 - 24700422
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | ||||| |  ||||||||||||||| | ||||||||||||||    
T  24700483 ttttttacagggacgaaattcaaaaccgacccaaattacagggactaatatcatatttaagc 24700422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 5340540 - 5340601
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| |||||||||| ||||| || |||||||||||| ||||  || ||||||||||    
T  5340540 ttttttacaaggacgaaaatcaaaacgggcccaaattacaggaacgaaaatgatatttaagc 5340601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 24701124 - 24701185
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| |||||||||| ||||| |  |||||||||||||||||  || ||||||||||    
T  24701124 ttttttacaaggacgaaaatcaaaacggacccaaattacagggacgaaaatgatatttaagc 24701185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 26636256 - 26636301
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacg 220  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||    
T  26636256 ttttttacagggacgaaaatcaaaattagcccaaattacagggacg 26636301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 36187179 - 36187240
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||| ||||| |||||| |||||||  | |||||||||||||||  |||||||||||||    
T  36187179 ttttttatagggatgaaaatcaaaactgatctaaattacagggacgaaaatcatatttaagc 36187240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 13388432 - 13388372
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaag 235  Q
    |||||||||||||||||| | ||||| |  ||||||||||| ||| | |||||||||||||    
T  13388432 ttttttacagggacgaaattcaaaaccgacccaaattacagagactaatatcatatttaag 13388372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 544422 - 544343
Alignment:
Q  156 agggatgcatttcaaagtatttttt--acagggacgaaaattaaaactggaccaaattacagggacgactatcatattta 233  Q
    ||||||| |||||||||| ||||||  |||||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  544422 agggatgtatttcaaagttttttttttacagggacgaaaatcaaaactggaccaaattacagagacgattatcatattta 544343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 3184765 - 3184691
Alignment:
Q  156 agggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatat 230  Q
    ||||||| |||||||| | |||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||    
T  3184765 agggatgtatttcaaatttttttttacagggacgaaaatcaaaacttgtccaaattacagggacgattatcatat 3184691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 1175100 - 1175161
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||| |||||| ||||| || |||||||||||||||||  |||||||||||||    
T  1175100 ttttttacagggatgaaaatcaaaacgggtccaaattacagggacgaaaatcatatttaagc 1175161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 476983 - 476922
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || ||||||||||||||| |  || ||||||||||    
T  476983 ttttttacagggacgaaaatcaaaacgggcccaaattacagggacaaaaatgatatttaagc 476922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 477647 - 477708
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | ||||| |  ||||||||||||||| | ||||||||||||||    
T  477647 ttttttacagggacgaaattcaaaaccgacccaaattacagggactaatatcatatttaagc 477708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 9699153 - 9699198
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacg 220  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||    
T  9699153 ttttttacagggacgaaaatcaaaattagcccaaattacagggacg 9699198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 24051317 - 24051256
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  24051317 ttttttacagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaagc 24051256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 29979222 - 29979283
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  29979222 ttttttacagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaagc 29979283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 31170274 - 31170213
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| ||||||| |  |||||||||||||||   |||| |||||||||    
T  31170274 ttttttacagggacgaaatttaaaaccgatccaaattacagggactgatatcttatttaagc 31170213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 32404037 - 32403976
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||| ||| ||||||||||| |||| ||| ||||||||||||||| |  |||||||||||||    
T  32404037 ttttctacggggacgaaaatcaaaagtggtccaaattacagggacaaaaatcatatttaagc 32403976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 2812494 - 2812554
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaag 235  Q
    ||||||||| |||||||||| |||||||  | |||||| ||||||||  ||||||||||||    
T  2812494 ttttttacaaggacgaaaatcaaaactgatctaaattatagggacgaaaatcatatttaag 2812554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 29145212 - 29145295
Alignment:
Q  155 cagggatgcatttcaaagtatttttt--acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||||| ||||||  |||||||||||||| |||| | ||||||||||||||||||| ||||||||||||||    
T  29145212 cagggatgtatttcaaagtttttttttcacagggacgaaaatcaaaatttgaccaaattacagggacgattatcatatttaagc 29145295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 29144824 - 29144907
Alignment:
Q  155 cagggatgcatttcaaagtatttttt--acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||||| ||||||  |||||||||||||| |||| | || |||||||||||||||| ||||||||||||||    
T  29144824 cagggatgtatttcaaagtttttttttcacagggacgaaaatcaaaatttgatcaaattacagggacgattatcatatttaagc 29144907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 9170666 - 9170744
Alignment:
Q  155 cagggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||| ||| |||||||||| |||||||||||||||||||| |||||||||||||| |||| | |||| ||||||||||||    
T  9170666 caggaatgtatttcaaagt-ttttttacagggacgaaaatcaaaactggaccaaaatacaagaacgattatcatatttaa 9170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 54110480 - 54110539
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||||||||||||||||| ||||||| | |||||||||||||||| ||||||||||||    
T  54110480 ttttttacagggacgaaaatcaaaactgaaacaaattacagggacgattatcatatttaa 54110539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 39263688 - 39263626
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||||  ||||||||||||||    
T  39263688 ttttttacaggaacgaaaatcaaaactggtccaaattacagggacgaaaatcatatttaagct 39263626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 865477 - 865416
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||||    
T  865477 ttttttacagggacgaaaatcaaaactgacccaaattacagggatgattatcatatttaagc 865416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 29517831 - 29517892
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| || |||||||||||||||||| ||||||||| ||||    
T  29517831 ttttttacagggacgaaaatcaaaattgaaccaaattacagggacgattatcatattaaagc 29517892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 866269 - 866328
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    ||||||||| |||||||||| |||||| ||| ||||||||||||||| ||||||||||||    
T  866269 ttttttacaaggacgaaaatcaaaactagactaaattacagggacgattatcatatttaa 866328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 572176 - 572229
Alignment:
Q  183 agggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||| ||||||||||||||||| |||||| | ||||||||||||||    
T  572176 agggacgaaaatcaaaactggaccaaattatagggacaattatcatatttaagc 572229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 24573810 - 24573729
Alignment:
Q  155 cagggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||  | ||||||||| | |||||||| |||||||||||||||||||| |||   ||||||||||||||    
T  24573810 cagggatgtatttcaattttttttttacacgtacgaaaatcaaaactggaccaaattacagagacagttatcatatttaagc 24573729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 44876147 - 44876066
Alignment:
Q  155 cagggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| |||||||||| ||||||||||| |||||||  |||||||  |||||||||| | || | ||||||||||||||    
T  44876147 cagggatgtatttcaaagttttttttacaggaacgaaaagcaaaactgacccaaattacaagaacaattatcatatttaagc 44876066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 48614275 - 48614226
Alignment:
Q  186 gacgaaaattaaaactggaccaaattacagggacgactatcatatttaag 235  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  48614275 gacgaaaattaaaactggaccaatttacacggacgattatcatatttaag 48614226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 48615217 - 48615278
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||| |||||| |||||| | |||||||||| |||||| ||||||||||||||    
T  48615217 ttttttacagggatgaaaatcaaaactcgtccaaattacatggacgaatatcatatttaagc 48615278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 53535596 - 53535657
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||  || ||||||||||    
T  53535596 ttttttacagggacgaaaatcaaaacgggcccaaattacagggacgaaaatgatatttaagc 53535657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 42712130 - 42712189
Alignment:
Q  175 ttttttac-agggacgaaaattaaaactggaccaaattacagggacgactatcatattta 233  Q
    |||||||| |||||| ||||| |||||||| |||||||||| ||||||||||||||||||    
T  42712130 ttttttactagggacaaaaatcaaaactggtccaaattacaaggacgactatcatattta 42712189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 12658447 - 12658385
Alignment:
Q  175 ttttttacagggacgaaaattaaaac-tggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||  ||| |||||||||| |||||| ||||||||||||||    
T  12658447 ttttttacagggacgaaaataaaaaaatggcccaaattacatggacgattatcatatttaagc 12658385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 54109559 - 54109498
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    ||||||||||||  |||||| |||||||||  ||||||||||||||| |||||||||||||||    
T  54109559 ttttttacagggt-gaaaatcaaaactggagtaaattacagggacgattatcatatttaagct 54109498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 6056471 - 6056410
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||| ||||||||| |||||||  | |||||| |||||||| ||||||||||||||    
T  6056471 ttttttacagtgacgaaaatcaaaactgccctaaattatagggacgattatcatatttaagc 6056410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 38657889 - 38657828
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||    |||||||||||||||||  |||||||||||||    
T  38657889 ttttttacagggacgaaaatcaaaacgaacccaaattacagggacgaaaatcatatttaagc 38657828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 51162909 - 51162970
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| |  |||||||||| ||||||  |||||||||||||    
T  51162909 ttttttacagggacgaaaatcaaaacggacccaaattacaaggacgaaaatcatatttaagc 51162970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 11701680 - 11701736
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatt 231  Q
    |||| |||| |||||||||| |||||||| ||||||||||||||||| ||| |||||    
T  11701680 ttttctacatggacgaaaatcaaaactggtccaaattacagggacgattataatatt 11701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 6711118 - 6711172
Alignment:
Q  182 cagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||| | |||||||| ||||||||||||||| |  |||||||||||||    
T  6711118 cagggacgaaattcaaaactggtccaaattacagggacaaaaatcatatttaagc 6711172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 50064669 - 50064731
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    ||||||||| |||||||||| |||||  | ||||||||||||||||| |  ||||||||||||    
T  50064669 ttttttacaaggacgaaaatcaaaacgcgcccaaattacagggacgaattgcatatttaagct 50064731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 15807718 - 15807657
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  15807718 ttttttacagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaagc 15807657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 47864551 - 47864490
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  47864551 ttttttacagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaagc 47864490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 38658498 - 38658558
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaag 235  Q
    ||||||||| |||||||| | ||||| |  ||||||||||||||| | |||||||||||||    
T  38658498 ttttttacaaggacgaaattcaaaaccgatccaaattacagggactaatatcatatttaag 38658558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 26828843 - 26828766
Alignment:
Q  158 ggatgcatttcaaagtattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||| |||||||| | ||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||||    
T  26828843 ggatgtatttcaaatt-ttttttacagggaagaaaatcaaaactggaccaaattacagggacaattatcatatttaagc 26828766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 14419473 - 14419392
Alignment:
Q  155 cagggatgcatttcaaagta--ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||||| ||||||||||   |||||||||||||||||||| |||||||  ||||| ||||||||||| ||||||||||||    
T  14419473 cagggatgtatttcaaagttctttttttacagggacgaaaatcaaaactgccccaaaatacagggacgattatcatatttaa 14419392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 6822666 - 6822605
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||  |||||| ||||||||||||||||| | ||||||||||||||    
T  6822666 ttttttacagggacgaaaaccaaaacttgaccaaattacagggacaattatcatatttaagc 6822605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 21985575 - 21985636
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||  |||||||||||||    
T  21985575 ttttttacagggacgaaaatcaaaacgggtccaaattacagggacgaaaatcatatttaagc 21985636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 41345436 - 41345489
Alignment:
Q  183 agggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  41345436 agggacgaaaatcaaaactggaccaaattatagggacgattatcatatttaagc 41345489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 41567920 - 41567982
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    |||||||||||||||||||| ||||| || |||||||||||||| ||  ||||||||||||||    
T  41567920 ttttttacagggacgaaaatcaaaacgggcccaaattacagggatgaaaatcatatttaagct 41567982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 11337708 - 11337769
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||  || ||||||||||    
T  11337708 ttttttacagggacgaaaatcaaaacgggcccaaattacagggacgaaaatgatatttaagc 11337769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 17995911 - 17995850
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| ||  |||||||||||||||||  |||||||||||||    
T  17995911 ttttttacagggacgaaaatcaaaattgacccaaattacagggacgaaaatcatatttaagc 17995850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 37796651 - 37796598
Alignment:
Q  183 agggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  37796651 agggacgaaaatcaaaactgacccaaattacagggacgattatcatatttaagc 37796598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 21984920 - 21984874
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacga 221  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||    
T  21984920 ttttttacagggacgaaaatcaaaacgggcccaaattacagggacga 21984874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 40193943 - 40193861
Alignment:
Q  155 cagggatgcatttcaaagtatttttt-acagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||| ||| |||||||||| |||||| ||||| |||||||| |||| ||  ||||||||||| ||||| ||||||||||||||    
T  40193943 caggaatgtatttcaaagtttttttttacaggaacgaaaatcaaaattgacccaaattacagcgacgattatcatatttaagc 40193861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 789360 - 789299
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||| ||||| |||||| |||||||  |||||||||||||||||  |||||||||||||    
T  789360 ttttttagagggatgaaaatcaaaactgacccaaattacagggacgaaaatcatatttaagc 789299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 26829629 - 26829674
Alignment:
Q  191 aaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||||    
T  26829629 aaatcaaaactggactaaattacagggacgattatcatatttaagc 26829674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 32497062 - 32497001
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||||| |||||| |||||||  |||||||||||| || | ||||||||||||||    
T  32497062 ttttttacagggatgaaaatcaaaactgacccaaattacaggaacaattatcatatttaagc 32497001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 42276591 - 42276530
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| || | ||||||||| |||||  |||||||||||||    
T  42276591 ttttttacagggacgaaaatcaaaacgggtctaaattacagagacgaaaatcatatttaagc 42276530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 47723476 - 47723536
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||||| |||||||| |||||||| |||||||| ||||||||  |||||||||||||    
T  47723476 ttttttacagg-acgaaaatcaaaactggtccaaattatagggacgaaaatcatatttaagc 47723536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 46196746 - 46196794
Alignment:
Q  186 gacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    ||||||||| |||  ||||||||||||||||||||| ||||||||||||    
T  46196746 gacgaaaataaaatttggaccaaattacagggacgattatcatatttaa 46196794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 7945395 - 7945334
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    ||||||||| |||||||||| |||||  | ||||||||||||||||| |  |||||||||||    
T  7945395 ttttttacaaggacgaaaatcaaaacgtgtccaaattacagggacgaattgcatatttaagc 7945334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 23966377 - 23966316
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  23966377 ttttttacagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaagc 23966316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 26585536 - 26585475
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | ||||| |  | ||||||||||||| | ||||||||||||||    
T  26585536 ttttttacagggacgaaattcaaaaccgacctaaattacagggactaatatcatatttaagc 26585475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 28763037 - 28762976
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||| | |||||    ||||||||||||||| | ||||||||||||||    
T  28763037 ttttttacagggacgaaattcaaaaccaacccaaattacagggactaatatcatatttaagc 28762976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 34458851 - 34458908
Alignment:
Q  179 ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||| |||| || ||||||||| || || || ||||||||||||||    
T  34458851 ttacagggacgaaaatcaaaattgaaccaaattatagagatgattatcatatttaagc 34458908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 35088435 - 35088374
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||||||  |||||||| |  |||||  |||||||||||||    
T  35088435 ttttttacagggacgaaaatcaaaactgatccaaattataatgacgaaaatcatatttaagc 35088374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 16779769 - 16779849
Alignment:
Q  155 cagggatgcatttcaaagtatttt-ttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaa 234  Q
    |||||||| | |||||||| |||| |||||||||||||| | ||||| |  |||||||||| |||| | ||||||||||||    
T  16779769 cagggatgtaattcaaagtttttttttacagggacgaaattcaaaaccgacccaaattacaaggactaatatcatatttaa 16779849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 1568 - 1630
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagct 237  Q
    ||||||||| |||||||| | ||||| |  ||||||||||||||| | |||||||||||||||    
T  1568 ttttttacacggacgaaattcaaaaccgatccaaattacagggactaatatcatatttaagct 1630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 135566 - 135484
Alignment:
Q  155 cagggatgcatttcaaag-tattttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||| | ||||||| | |||||||||||||| ||| | ||||| |  ||||||||||||||| | ||||||||||||||    
T  135566 cagggatgtaattcaaagattttttttacagggacaaaattcaaaaccgacccaaattacagggactaatatcatatttaagc 135484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 28345 - 28284
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| ||||| |  ||||||||| |||||||  || ||||||||||    
T  28345 ttttttacagggacgaaaatcaaaacggatccaaattacggggacgaaaatgatatttaagc 28284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 10368 - 10307
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacgactatcatatttaagc 236  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||  |  |||||||||||    
T  10368 ttttttacagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaagc 10307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 11135 - 11180
Alignment:
Q  175 ttttttacagggacgaaaattaaaactggaccaaattacagggacg 220  Q
    |||||||||||||||||||| |||| | | ||||||||||||||||    
T  11135 ttttttacagggacgaaaatcaaaattcgcccaaattacagggacg 11180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University