View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5137_low_1 (Length: 484)

Name: NF5137_low_1
Description: NF5137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5137_low_1
NF5137_low_1
[»] chr1 (3 HSPs)
chr1 (38-468)||(46748648-46749061)
chr1 (109-157)||(16925588-16925636)
chr1 (115-179)||(18946048-18946112)
[»] chr8 (4 HSPs)
chr8 (109-193)||(42874497-42874581)
chr8 (114-183)||(18170492-18170561)
chr8 (114-183)||(18634060-18634129)
chr8 (114-181)||(26915252-26915319)
[»] chr7 (2 HSPs)
chr7 (104-181)||(1885543-1885620)
chr7 (107-181)||(5937433-5937507)
[»] chr6 (1 HSPs)
chr6 (104-183)||(1334631-1334710)
[»] chr5 (3 HSPs)
chr5 (104-191)||(30080503-30080590)
chr5 (142-209)||(42192284-42192351)
chr5 (104-181)||(19167588-19167666)
[»] chr3 (2 HSPs)
chr3 (142-183)||(14338493-14338534)
chr3 (120-176)||(41319327-41319383)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 38 - 468
Target Start/End: Complemental strand, 46749061 - 46748648
Alignment:
Q  38 gaaagaatcacctttctttattgaatggactgtagtgctggacctnnnnnnnnntactgattggaccaccagacatgacactgacacggacacgccgaca 137  Q
    ||||||||||||||||||||||||||||||||||||||| |||||         || |||||||| ||||| ||||||||||||||||||||||||||||    
T  46749061 gaaagaatcacctttctttattgaatggactgtagtgctagacctaaaaaaa--tattgattggatcaccacacatgacactgacacggacacgccgaca 46748964  T
Q  138 ccattaaaattttgaaaaaacggcatagttcaatgtaatcacaaatatcagtgttgcgtcggtatcagacacgtataagacaccagatacgcctttaatt 237  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||           |||| || |||||||||    
T  46748963 ccattaaaattttgaaaaaacgacatagttcaatgtaatcacaaatgtcagtgttgcgtcggtatcagacac-----------cagacacacctttaatt 46748875  T
Q  238 aaaagtgtccgtgcaaccgagatggtaacttttggtttttcttgctactagacaggtgcaaacccttttatgcgatagtgcatgtgacatttttgtgata 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46748874 aaaagtgtccgtgcaaccgagatggtaacttttggtttttcttgctactagacaggtgcaaacccttttatgtgatagtgcatgtgacatttttgtgata 46748775  T
Q  338 tgtatgactctgatattatgaggctttataaaaaattgtctccaacttctcattttaaatgccaccaatttgttcaggaattcttcnnnnnnnnnnnatc 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |            |||    
T  46748774 tgtatgactctgatattatgaggctttataaaaaattgtctccaacttctcattttaaatgccaccaatttgttcaagaattcat----ttttttttatc 46748679  T
Q  438 tgctgctacactcttatccttatcaggtttt 468  Q
    |||||||||||||||||||||||||||||||    
T  46748678 tgctgctacactcttatccttatcaggtttt 46748648  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 16925588 - 16925636
Alignment:
Q  109 gacatgacactgacacggacacgccgacaccattaaaattttgaaaaaa 157  Q
    ||||||||||||||||||||| | ||| |||  ||||||||||||||||    
T  16925588 gacatgacactgacacggacatgtcgataccgataaaattttgaaaaaa 16925636  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 18946112 - 18946048
Alignment:
Q  115 acactgacacggacacgccgacaccattaaaattttgaaaaaacggcatagttcaatgtaatcac 179  Q
    |||| ||||||||| || |||||||| | ||||||||| |||| | |||| ||||||||||||||    
T  18946112 acacggacacggacccgtcgacaccagtcaaattttgagaaaatgacataattcaatgtaatcac 18946048  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 42874497 - 42874581
Alignment:
Q  109 gacatgacactgacacggacacgccgacaccattaaaattttgaaaaaacggcatagttcaatgtaatcacaaatatcagtgttg 193  Q
    |||| |||||| ||||||||||| ||||||| |||| ||||||| |||| | |||| |||||||||||||||| | |||||||||    
T  42874497 gacacgacactaacacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttg 42874581  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 18170561 - 18170492
Alignment:
Q  114 gacactgacacggacacgccgacaccattaaaattttgaaaaaacggcatagttcaatgtaatcacaaat 183  Q
    ||||| ||||| ||||||||||||| ||||||| ||||||||||   |||| ||||||||||| ||||||    
T  18170561 gacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattcaatgtaattacaaat 18170492  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 18634129 - 18634060
Alignment:
Q  114 gacactgacacggacacgccgacaccattaaaattttgaaaaaacggcatagttcaatgtaatcacaaat 183  Q
    ||||| ||||| ||||||||||||| ||||||| ||||||||||   |||| ||||||||||| ||||||    
T  18634129 gacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattcaatgtaattacaaat 18634060  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 26915319 - 26915252
Alignment:
Q  114 gacactgacacggacacgccgacaccattaaaattttgaaaaaacggcatagttcaatgtaatcacaa 181  Q
    |||||||||||||||||| ||||||   ||||||||||| |||| | |||| || |||||||||||||    
T  26915319 gacactgacacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaa 26915252  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 1885543 - 1885620
Alignment:
Q  104 caccagacatgacactgacacggacacgccgacaccattaaaattttgaaaaaacggcatagttcaatgtaatcacaa 181  Q
    |||| |||| |||||||| ||||||||  ||||||   |||||||||||||||| | |||| ||||||||||||||||    
T  1885543 caccggacacgacactgatacggacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcacaa 1885620  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 5937507 - 5937433
Alignment:
Q  107 cagacatgacactgacacggacacgccgacaccattaaaattttgaaaaaacggcatagttcaatgtaatcacaa 181  Q
    ||||||| |||||||||| |||||| | ||||   ||||||||||| |||| | |||| ||||||||||||||||    
T  5937507 cagacataacactgacacagacacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaa 5937433  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 1334631 - 1334710
Alignment:
Q  104 caccagacatgacactgacacggacacgccgacaccattaaaattttgaaaaaacggcatagttcaatgtaatcacaaat 183  Q
    |||| |||| ||||||||||| |||||   |||||   |||||||||||||||| | |||| ||||||||||||||||||    
T  1334631 caccggacacgacactgacacagacacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcacaaat 1334710  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 30080590 - 30080503
Alignment:
Q  104 caccagacatgacactgacacggacacgccgacaccattaaaattttgaaaaaacggcatagttcaatgtaatcacaaatatcagtgt 191  Q
    ||||||||| |||| ||||||||| | | ||||||   ||||||||||| |||| | |||| |||||||||||||||| |||| ||||    
T  30080590 caccagacacgacaatgacacggaaatgtcgacactgataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgt 30080503  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 42192284 - 42192351
Alignment:
Q  142 taaaattttgaaaaaacggcatagttcaatgtaatcacaaatatcagtgttgcgtcggtatcagacac 209  Q
    ||||||||||| | || | |||| ||||||||||||||| || ||| ||||||||||| |||||||||    
T  42192284 taaaattttgagacaatgacataattcaatgtaatcacacatgtcaatgttgcgtcggcatcagacac 42192351  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 19167666 - 19167588
Alignment:
Q  104 caccagacatgacactgacacggacacgccgacaccattaaaattttgaa-aaaacggcatagttcaatgtaatcacaa 181  Q
    ||||||||| ||||||||||| ||||||  ||||||  |||||||||||| |||| | || | ||||||||||||||||    
T  19167666 caccagacacgacactgacacagacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaa 19167588  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 14338534 - 14338493
Alignment:
Q  142 taaaattttgaaaaaacggcatagttcaatgtaatcacaaat 183  Q
    |||||||||||||||| | |||| ||||||||||||||||||    
T  14338534 taaaattttgaaaaaatgacataattcaatgtaatcacaaat 14338493  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 41319383 - 41319327
Alignment:
Q  120 gacacggacacgccgacaccattaaaattttgaaaaaacggcatagttcaatgtaat 176  Q
    |||||||||||| |||||||| ||| | |||||||||| | |||| |||||||||||    
T  41319383 gacacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

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