View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5138_high_3 (Length: 253)
Name: NF5138_high_3
Description: NF5138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5138_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 41638155 - 41637945
Alignment:
| Q |
21 |
aaagacaatttgaaacaacgtgttcctacacaattcatccaaattccaannnnnnn-aacaaaattaattggattatattttcttaatgttatggttact |
119 |
Q |
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| T |
41638155 |
aaagacaatttgaaacaacgtgttcctacacaattcacccaaattccaattttttttaacaaaattaattggattatattttcttaatgttatggttact |
41638056 |
T |
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| Q |
120 |
ggtcatttatatgacaaagaagctaagaggcaattgattggaaaaggagaagaaagaaaattgggttaggaattgaattgtgtaggagcaagttgtttca |
219 |
Q |
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| T |
41638055 |
ggtcatttatatgacaaagaagctaagaggcaattgattggaaaaggagaagaaagaaaattgggtcaggaattgaattgtgcaggagcaagttgtttca |
41637956 |
T |
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| Q |
220 |
aattgtctttc |
230 |
Q |
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| T |
41637955 |
aattgtctttc |
41637945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 41638119 - 41638156
Alignment:
| Q |
193 |
tgaattgtgtaggagcaagttgtttcaaattgtctttc |
230 |
Q |
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| T |
41638119 |
tgaattgtgtaggaacacgttgtttcaaattgtctttc |
41638156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 50407968 - 50408112
Alignment:
| Q |
86 |
aattggattatattttcttaatgttatggttactggtcatttatatgacaaagaagctaagaggcaattgattggaaaaggagaagaaagaaaattgggt |
185 |
Q |
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| T |
50407968 |
aattggattatattttcttaatgttagggtcgctggtcatttatatgacaaagaagctaagaggcaattgattgaaaaaggagtaaaaagaaaattgggt |
50408067 |
T |
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| Q |
186 |
taggaattgaattgtgtaggagcaagttgtttcaaattgtctttc |
230 |
Q |
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| T |
50408068 |
caggaattgaattgtgtaggagcaagttgtttcagattgtctttc |
50408112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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