View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5138_low_1 (Length: 422)

Name: NF5138_low_1
Description: NF5138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5138_low_1
NF5138_low_1
[»] chr6 (4 HSPs)
chr6 (18-367)||(18246462-18246811)
chr6 (18-207)||(2920852-2921041)
chr6 (128-219)||(1034267-1034358)
chr6 (79-164)||(32548934-32549018)
[»] chr3 (4 HSPs)
chr3 (18-367)||(1259209-1259558)
chr3 (18-367)||(37242497-37242846)
chr3 (255-367)||(34873161-34873273)
chr3 (128-180)||(53553676-53553728)
[»] chr4 (1 HSPs)
chr4 (18-367)||(16989426-16989775)
[»] chr7 (1 HSPs)
chr7 (18-367)||(31234661-31235010)
[»] chr8 (5 HSPs)
chr8 (211-367)||(2319457-2319613)
chr8 (87-195)||(37269828-37269936)
chr8 (102-216)||(36404064-36404178)
chr8 (87-195)||(42941232-42941340)
chr8 (128-218)||(8273805-8273895)
[»] chr5 (1 HSPs)
chr5 (128-221)||(36988995-36989088)
[»] chr2 (2 HSPs)
chr2 (140-221)||(11272496-11272577)
chr2 (87-163)||(33858639-33858715)
[»] scaffold0760 (1 HSPs)
scaffold0760 (87-195)||(1707-1815)
[»] chr1 (1 HSPs)
chr1 (102-218)||(32774127-32774243)


Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 18246462 - 18246811
Alignment:
Q  18 acaaaatccctcccatagaaccgcaccaacaataacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttag 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18246462 acaaaatccctcccatagaaccgcaccaacaataacgctccagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttag 18246561  T
Q  118 acattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcact 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18246562 acattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcact 18246661  T
Q  218 attttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18246662 attttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatgctcggagattcatgaa 18246761  T
Q  318 tgagagctgtttgagaagatcggtgtaattcaagctattgcaaagctggc 367  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  18246762 tgagagctgtttgagaagatctgtgtcattcaagctattgcaaagctggc 18246811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 2920852 - 2921041
Alignment:
Q  18 acaaaatccctcccatagaaccgcaccaacaataacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttag 117  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  2920852 acaaaatccctcccatagatctgcaccaacaataacgctccagctacaacaacacagaaaggcagattcaaaaagaaagccacgttcatcttctgtttag 2920951  T
Q  118 acattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaat 207  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||    
T  2920952 acattctcgtggattccatgtccactcataaaagaggaaagaagctatctttaacctactcaacatccaaacccaagaaagtgctttaat 2921041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 1034358 - 1034267
Alignment:
Q  128 ggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactat 219  Q
    |||||||| ||||||||||| |||||||| || |||| ||| || ||||||||| |||||| |||||||| ||||||||| |||| ||||||    
T  1034358 ggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaacgtccaaacccaagaaaccgctttaatctcatccactat 1034267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 32549018 - 32548934
Alignment:
Q  79 gcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagcta 164  Q
    ||||||||||||| |||||  | |||||||||| |||||||||| ||  |||||| | ||||||| ||| |||| |||||||||||    
T  32549018 gcagattcaaaaaaacagcacccttcatcttctatttagacattatctaggattctaagtccacttataaaaga-gaaagaagcta 32548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 1259209 - 1259558
Alignment:
Q  18 acaaaatccctcccatagaaccgcaccaacaataacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttag 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1259209 acaaaatccctcccatagaaccgcaccaacaataacgctccagctacaacagcacaaaaaggcagattcaaaaagacagccgtgttcatcttctgtttag 1259308  T
Q  118 acattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcact 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1259309 acattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcact 1259408  T
Q  218 attttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1259409 attttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaa 1259508  T
Q  318 tgagagctgtttgagaagatcggtgtaattcaagctattgcaaagctggc 367  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  1259509 tgagagctgtttgagaagatctgtgtcattcaagctattgcaaagctggc 1259558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 37242497 - 37242846
Alignment:
Q  18 acaaaatccctcccatagaaccgcaccaacaataacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttag 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37242497 acaaaatccctcccatagaaccgcaccaacaataacgctccagctacaacagcacaaaaaggcagattcaaaaagacagccgtgttcatcttctgtttag 37242596  T
Q  118 acattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcact 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37242597 acattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcact 37242696  T
Q  218 attttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37242697 attttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaa 37242796  T
Q  318 tgagagctgtttgagaagatcggtgtaattcaagctattgcaaagctggc 367  Q
    ||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  37242797 tgagagctgtttgagaagatctgtgtcattcaagctattgcagagctggc 37242846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 255 - 367
Target Start/End: Complemental strand, 34873273 - 34873161
Alignment:
Q  255 aaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaatgagagctgtttgagaagatcggtgtaattcaagcta 354  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||    
T  34873273 aaattatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaatgagagctgtttgagaagacctgtgtcattcaagcta 34873174  T
Q  355 ttgcaaagctggc 367  Q
    ||||||| |||||    
T  34873173 ttgcaaaactggc 34873161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 53553676 - 53553728
Alignment:
Q  128 ggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaa 180  Q
    |||||||| ||||||||||| |||||||||||||||| ||| || ||||||||    
T  53553676 ggattccaagtccactcataaaagaggaaagaagctatctttaatctactcaa 53553728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 16989775 - 16989426
Alignment:
Q  18 acaaaatccctcccatagaaccgcaccaacaataacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttag 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16989775 acaaaatccctcccatagaaccgcaccaacaataacgctccagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttag 16989676  T
Q  118 acattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcact 217  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16989675 acattctcatggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcact 16989576  T
Q  218 attttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16989575 attttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaa 16989476  T
Q  318 tgagagctgtttgagaagatcggtgtaattcaagctattgcaaagctggc 367  Q
    ||||||||||||||||||||  |||| |||||||||||||||||| ||||    
T  16989475 tgagagctgtttgagaagatttgtgtcattcaagctattgcaaagttggc 16989426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 31234661 - 31235010
Alignment:
Q  18 acaaaatccctcccatagaaccgcaccaacaataacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttag 117  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||    
T  31234661 acaaaatccctcccatagaaccgcaccaacaataacgctctagctacaacatcacaaaaaggcagattcaaaaagacagtcgtgttcatcttctgtttag 31234760  T
Q  118 acattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcact 217  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31234761 acattctcgtggattccaagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcact 31234860  T
Q  218 attttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31234861 attttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagattcatgaa 31234960  T
Q  318 tgagagctgtttgagaagatcggtgtaattcaagctattgcaaagctggc 367  Q
    |||||||| ||| ||||||||  ||| |||||||||||||||||||||||    
T  31234961 tgagagctatttaagaagatctatgtcattcaagctattgcaaagctggc 31235010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 211 - 367
Target Start/End: Complemental strand, 2319613 - 2319457
Alignment:
Q  211 attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2319613 attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaaaactataatgttggagaagatactcggagat 2319514  T
Q  311 tcatgaatgagagctgtttgagaagatcggtgtaattcaagctattgcaaagctggc 367  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||    
T  2319513 tcatgaatgagagttgtttgagaagatctgtgtcattcaagctattgcaaagctggc 2319457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 37269828 - 37269936
Alignment:
Q  87 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatcca 186  Q
    |||||||||||||  |||||||||| || ||||||| ||  |||||||| ||||||||||| |||||||| ||||||| ||| |  |||||||||| |||    
T  37269828 aaaaagacagccggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacaccca 37269927  T
Q  187 aatccaaga 195  Q
    || ||||||    
T  37269928 aaaccaaga 37269936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 36404064 - 36404178
Alignment:
Q  102 ttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgc 201  Q
    |||||||||| |||| ||||| ||  |||||||| |||||||| ||||||||||| ||||||| ||| |  |||||||||  ||||| |||||| | | |    
T  36404064 ttcatcttctatttaaacattctctaggattccaagtccactcgtagaagaggaaggaagctatcttaagtctactcaacgcccaaaaccaagataccac 36404163  T
Q  202 tttaatttcattcac 216  Q
    ||| |||||||||||    
T  36404164 tttgatttcattcac 36404178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 42941340 - 42941232
Alignment:
Q  87 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatcca 186  Q
    |||||||||||||  |||||||||| ||  |||||| ||  |||||||| ||||||||||| |||||||| ||||||| ||| |  |||||||||| ||     
T  42941340 aaaaagacagccggcttcatcttctattacgacattctctaggattccaagtccactcataaaagaggaaggaagctatctttagtctactcaacacccc 42941241  T
Q  187 aatccaaga 195  Q
    || ||||||    
T  42941240 aaaccaaga 42941232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 8273895 - 8273805
Alignment:
Q  128 ggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcacta 218  Q
    ||||||||  |||||||||| |||||||||||||||| ||| || ||||||  | |||||| |||||||| ||| ||||| |||| |||||    
T  8273895 ggattccaaatccactcataaaagaggaaagaagctatctttaatctactcgtcgtccaaacccaagaaaccgccttaatctcatccacta 8273805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 36989088 - 36988995
Alignment:
Q  128 ggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactattt 221  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||| ||||| ||||||||||    
T  36989088 ggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgctttgatttcgttcactattt 36988995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 11272577 - 11272496
Alignment:
Q  140 cactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactattt 221  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||| |||||| ||||||||||| ||||    
T  11272577 cactcatagaagaggaaagaagctatctttaacctactcaacgtccaaacccaagaaaccgctttgatttcattcacaattt 11272496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 33858639 - 33858715
Alignment:
Q  87 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagct 163  Q
    ||||| |||||| |||||||||||| |||||||||| ||| |||||||| ||||||||||| |||||||| ||||||    
T  33858639 aaaaaaacagccacgttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaaggaagct 33858715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 1707 - 1815
Alignment:
Q  87 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatcca 186  Q
    |||||||||| ||  |||||||||| || ||||||| ||  |||||||| ||||||||||| |||||||| ||||||| ||| |  |||||||||| |||    
T  1707 aaaaagacagtcggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacaccca 1806  T
Q  187 aatccaaga 195  Q
    || ||||||    
T  1807 aaaccaaga 1815  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 32774127 - 32774243
Alignment:
Q  102 ttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgc 201  Q
    |||||||||| ||||| || | ||  |||||||| ||||||||||| |||||||| || |||| ||| || ||||||||| |||||| |||||||| |||    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaaccgc 32774226  T
Q  202 tttaatttcattcacta 218  Q
    ||| || |||| |||||    
T  32774227 tttgatctcatccacta 32774243  T

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