View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5138_low_5 (Length: 238)

Name: NF5138_low_5
Description: NF5138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5138_low_5
NF5138_low_5
[»] chr8 (4 HSPs)
chr8 (10-222)||(16659136-16659348)
chr8 (10-222)||(22015151-22015362)
chr8 (59-222)||(1668421-1668584)
chr8 (60-222)||(38520867-38521029)
[»] chr2 (2 HSPs)
chr2 (10-222)||(3934963-3935175)
chr2 (10-222)||(43189255-43189469)
[»] chr3 (2 HSPs)
chr3 (10-222)||(52893725-52893938)
chr3 (60-222)||(2338457-2338619)
[»] chr5 (1 HSPs)
chr5 (10-222)||(3174480-3174692)
[»] chr4 (3 HSPs)
chr4 (60-222)||(23217861-23218023)
chr4 (10-222)||(45144266-45144478)
chr4 (10-222)||(45153035-45153247)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 16659348 - 16659136
Alignment:
Q  10 gagcagagatgcagagacactcttataaatactnnnnnnntattcacaaacttgagtcatcatccattccactccattagctttcaatttggagcagttt 109  Q
    ||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16659348 gagcaaagatgcagagacactcttataaatactaaaaaaatattcacaaacttgagtcatcatccattccactccattagctttcaatttggagcagttt 16659249  T
Q  110 aagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaaacaagta 209  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16659248 aagatgtaaaaagtttagtcctacatcaataatactatatttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaaacaagta 16659149  T
Q  210 atttcattagaaa 222  Q
    |||||||||||||    
T  16659148 atttcattagaaa 16659136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 22015362 - 22015151
Alignment:
Q  10 gagcagagatgcagagacactcttataaatactnnnnnnntattcacaaacttgagtcatcatccattccactccattagctttcaatttggagcagttt 109  Q
    ||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22015362 gagcaaagatgcagagacactcttataaatactaaaaaaatattcacaaacttgagtcatcatccattccactccattggctttcaatttggagcagttt 22015263  T
Q  110 aagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaaacaagta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22015262 aagatgtaaaaagtttagtcctacatcaataatactatgtttcacat-aaattaatcagtagattcctccaagattttaccacaaagacttaaacaagta 22015164  T
Q  210 atttcattagaaa 222  Q
    |||||||||||||    
T  22015163 atttcattagaaa 22015151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 1668584 - 1668421
Alignment:
Q  59 acttgagtcatcatccattccactccattagctttcaatttggagcagtttaagatgtaaaaagtttagtcctacatcaataatactatgtttcacataa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1668584 acttgagtcatcatccattccactccattagctttcaatttggagcagtttaagatgtaaaaagtttagtcctacatcaataatactatatttcacataa 1668485  T
Q  159 aattaatcagtagattcctccaagaatttaccacaaagacttaaacaagtaatttcattagaaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668484 aattaatcagtagattcctccaagaatttaccacaaagacttaaacaagtaatttcattagaaa 1668421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 38520867 - 38521029
Alignment:
Q  60 cttgagtcatcatccattccactccattagctttcaatttggagcagtttaagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaa 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38520867 cttgagtcatcatccattccactccattagctttcaatttggagcagtttaagatgtaaaaagtttagtcctacatcaataatactatatttcacataaa 38520966  T
Q  160 attaatcagtagattcctccaagaatttaccacaaagacttaaacaagtaatttcattagaaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38520967 attaatcagtagattcctccaagaatttaccacaaagacttaaacaagtaatttcattagaaa 38521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 3934963 - 3935175
Alignment:
Q  10 gagcagagatgcagagacactcttataaatactnnnnnnntattcacaaacttgagtcatcatccattccactccattagctttcaatttggagcagttt 109  Q
    ||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3934963 gagcaaagatgcagagacactcttataaatactaaaaaaatattcacaaacttgagtcatcatccattccactccattagctttcaatttggagcagttt 3935062  T
Q  110 aagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaaacaagta 209  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3935063 aagatgtaaaaagtttagtcctacatcaataatactatatttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaaacaagta 3935162  T
Q  210 atttcattagaaa 222  Q
     ||||||||||||    
T  3935163 gtttcattagaaa 3935175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 43189469 - 43189255
Alignment:
Q  10 gagcagagatgcagagacactcttataaatactnnnnnnn-tattcacaaacttgagtcatcatccattccactccattag-ctttcaatttggagcagt 107  Q
    ||||| |||||||||||||||||||| ||||||        |||||||||| ||||||||||||||||||||||||||||  |||| |||||||||||||    
T  43189469 gagcaaagatgcagagacactcttatgaatactaaaaaacatattcacaaatttgagtcatcatccattccactccattaaactttgaatttggagcagt 43189370  T
Q  108 ttaagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaaattaatcagtagattcctccaagaatttaccac-aaagacttaaacaa 206  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43189369 ttaagatgtaaaaagtttactcctacatcaataatactatacttcacatataattaatcagtagattcctccaagaatttaccacaaaagacttaaacaa 43189270  T
Q  207 gtaatttcattagaaa 222  Q
    || |||||||||||||    
T  43189269 gt-atttcattagaaa 43189255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 52893938 - 52893725
Alignment:
Q  10 gagcagagatgcagagacactcttataaatactnnnnnnn-tattcacaaacttgagtcatcatccattccactccattagctttcaatttggagcagtt 108  Q
    ||||| |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52893938 gagcaaagatgcagagacactcttataaatactaaaaaaaatattcacaaacttgagtcatcatccattccactccattggctttcaatttggagcagtt 52893839  T
Q  109 taagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaaacaagt 208  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52893838 taagatgtaaaaagtttagtcctacatcaataatactatatttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaaccaagt 52893739  T
Q  209 aatttcattagaaa 222  Q
    ||||||||||||||    
T  52893738 aatttcattagaaa 52893725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 2338457 - 2338619
Alignment:
Q  60 cttgagtcatcatccattccactccattagctttcaatttggagcagtttaagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaa 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2338457 cttgagtcatcatccattccactccattagctttcaatttggagcagtttaagatgtaaaaagtttagtcctacatcaataatactatatttcacataaa 2338556  T
Q  160 attaatcagtagattcctccaagaatttaccacaaagacttaaacaagtaatttcattagaaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338557 attaatcagtagattcctccaagaatttaccacaaagacttaaacaagtaatttcattagaaa 2338619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 3174692 - 3174480
Alignment:
Q  10 gagcagagatgcagagacactcttataaatactnnnnnnntattcacaaacttgagtcatcatccattccactccattagctttcaatttggagcagttt 109  Q
    ||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||    
T  3174692 gagcaaagatgcagagacactcttataaatactaaaaaaatattcacaaacttgagtcatcatccattccattccattggctttcaattgggagcagttt 3174593  T
Q  110 aagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaaacaagta 209  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3174592 aagatgtaaaaagtttagtcctacatcaataatactatatttcacataaaattaatcagtagattcctccaagaatttaacacaaagacttaaacaagta 3174493  T
Q  210 atttcattagaaa 222  Q
    ||||| |||||||    
T  3174492 atttctttagaaa 3174480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 23217861 - 23218023
Alignment:
Q  60 cttgagtcatcatccattccactccattagctttcaatttggagcagtttaagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaa 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23217861 cttgagtcatcatccattccactccattagctttcaatttggagcagtttaagatgtaaaaagtttagtcctacatcaataatactatatttcacataaa 23217960  T
Q  160 attaatcagtagattcctccaagaatttaccacaaagacttaaacaagtaatttcattagaaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23217961 attaatcagtagattcctccaagaatttaccacaaagacttaaacaagtaatttcattagaaa 23218023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 45144478 - 45144266
Alignment:
Q  10 gagcagagatgcagagacactcttataaatactnnnnnnntattcacaaacttgagtcatcatccattccactccattagctttcaatttggagcagttt 109  Q
    ||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  45144478 gagcaaagatgcagagacactcttataaatactaaaaaaatattcacaaacttgagtcatcatccattccactccattggatttcaatttgaagcagttt 45144379  T
Q  110 aagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaaacaagta 209  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  45144378 aagatgtaaaaaatttagtcctgcatcaataatactatatttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaactaagta 45144279  T
Q  210 atttcattagaaa 222  Q
    |||||||||||||    
T  45144278 atttcattagaaa 45144266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 45153247 - 45153035
Alignment:
Q  10 gagcagagatgcagagacactcttataaatactnnnnnnntattcacaaacttgagtcatcatccattccactccattagctttcaatttggagcagttt 109  Q
    ||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  45153247 gagcaaagatgcagagacactcttataaatactaaaaaaatattcacaaacttgagtcatcatccattccactccattggatttcaatttgaagcagttt 45153148  T
Q  110 aagatgtaaaaagtttagtcctacatcaataatactatgtttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaaacaagta 209  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  45153147 aagatgtaaaaaatttagtcctgcatcaataatactatatttcacataaaattaatcagtagattcctccaagaatttaccacaaagacttaattaagta 45153048  T
Q  210 atttcattagaaa 222  Q
    |||||||||||||    
T  45153047 atttcattagaaa 45153035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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