View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5138_low_6 (Length: 216)
Name: NF5138_low_6
Description: NF5138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5138_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 41637968 - 41637772
Alignment:
| Q |
1 |
gcaagttgtttcaaattgtctttcattattatcactgtagctactttgtttggtgccattatttcacttattttagtggctagaacaattaagttttata |
100 |
Q |
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| T |
41637968 |
gcaagttgtttcaaattgtctttcattattatcactgtagctactttgtttggtgccattatttcacttattttagtggctagaacaattaagttttata |
41637869 |
T |
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| Q |
101 |
aacgtgacatgttnnnnnnnnnggttttataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatga |
197 |
Q |
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| T |
41637868 |
aacgtgacatgttcaaaaaaaaagttttataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatga |
41637772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 41638631 - 41638699
Alignment:
| Q |
124 |
gttttataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatga |
192 |
Q |
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| T |
41638631 |
gttttataaacgtgatatatacaagaggtaccggtcagagcaggtagaagttgaaggagctacggatga |
41638699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 39628189 - 39628083
Alignment:
| Q |
1 |
gcaagttgtttcaaattgtctttcattattatcactgtagctactttgtttggtgccattatttcacttattttagtggctagaacaattaagttttata |
100 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||| | ||||| || ||||||||||||||||||||| |
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| T |
39628189 |
gcaagttgtttcaaattgtctttcatgtctatcactgcagctaacttgtttggtgtcattatttcagtaattttgttgactagaacaattaagttttata |
39628090 |
T |
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| Q |
101 |
aacgtga |
107 |
Q |
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||||||| |
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| T |
39628089 |
aacgtga |
39628083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 41638137 - 41638221
Alignment:
| Q |
5 |
gttgtttcaaattgtctttcattattatca---ctgtagctactttgtttggtgccattatttcacttattttagtggctagaac |
86 |
Q |
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||||||||||||||||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41638137 |
gttgtttcaaattgtctttcattatcatcatcactctggctactttgtttggtgccattatttcacttattttagtggccagaac |
41638221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 39628097 - 39628061
Alignment:
| Q |
124 |
gttttataaacgtgatatatacaagaggtaccgatca |
160 |
Q |
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| T |
39628097 |
gttttataaacgtgatatatacaagaggtaccgatca |
39628061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 50408089 - 50408195
Alignment:
| Q |
1 |
gcaagttgtttcaaattgtctttcattattatcactgtagctactttgtttggtgccattatttcacttattttagtggctagaacaattaagttttata |
100 |
Q |
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|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
50408089 |
gcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaaataagttttata |
50408188 |
T |
|
| Q |
101 |
aacgtga |
107 |
Q |
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|| |||| |
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| T |
50408189 |
aaggtga |
50408195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 50408181 - 50408254
Alignment:
| Q |
124 |
gttttataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatga |
197 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
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| T |
50408181 |
gttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatga |
50408254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 50386065 - 50386169
Alignment:
| Q |
6 |
ttgtttcaaattgtctttcattattatcactgtagctactttgtttggtgccattatttcacttattttagtggctagaacaattaagttttataaacgt |
105 |
Q |
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||||| ||| || ||||||||||||||||| | || || || |||||||| || ||||||||||||| |||||||| || | |||||||| ||| || |
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| T |
50386065 |
ttgttacaagttatctttcattattatcacagctgcaacattttttggtgctgttgtttcacttattttggtggctaggaccagaaagttttacaaaggt |
50386164 |
T |
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| Q |
106 |
gacat |
110 |
Q |
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||||| |
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|
| T |
50386165 |
gacat |
50386169 |
T |
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