View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139-Insertion-10 (Length: 214)
Name: NF5139-Insertion-10
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139-Insertion-10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 4195825 - 4196033
Alignment:
| Q |
6 |
cactaacttcttgtttttatggaagaaagatgaattttgattcttttgctaggttcttggttagttaccagcattggagttattatcctgttatgtgttt |
105 |
Q |
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| T |
4195825 |
cactaacttcttgtttttatggaagaaagatgaattttgattcttttgctaggttcttggttagttaccagcattggagttattatcctgttatgtgttt |
4195924 |
T |
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| Q |
106 |
tgctaggcttaatttgtttgctcaatctttctttttgttgttttctaatagaaaagtgcctaatagaaagatggaacttttagggttggctctgttttgg |
205 |
Q |
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| T |
4195925 |
tgctaggcttaatttgtttgctcaatctttctttttgttgttttctaatagaaaagtgcctaatagaaagatggaacttttagggttggctctgttttgg |
4196024 |
T |
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| Q |
206 |
atttggtac |
214 |
Q |
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||||||||| |
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| T |
4196025 |
atttggtac |
4196033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 4186793 - 4187001
Alignment:
| Q |
6 |
cactaacttcttgtttttatggaagaaagatgaattttgattcttttgctaggttcttggttagttaccagcattggagttattatcctgttatgtgttt |
105 |
Q |
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|||| |||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||| |
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| T |
4186793 |
cactcacttcttgttttcatgataggaagatgaactttgattcttttgctaggttcttggttagttaccaacattggagttattgtcctggtatatgttt |
4186892 |
T |
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| Q |
106 |
tgctaggcttaatttgtttgctcaatctttctttttgttgttttctaatagaaaagtgcctaatagaaagatggaacttttagggttggctctgttttgg |
205 |
Q |
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| T |
4186893 |
agctaggttcaatttgtttgctcgatcttttttcttgctactgtctaataggaaagttcccaatagaaagatagaacttttgggtttgcttgtgttttgg |
4186992 |
T |
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| Q |
206 |
atttggtac |
214 |
Q |
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| T |
4186993 |
atttggtac |
4187001 |
T |
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