View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139-Insertion-12 (Length: 151)
Name: NF5139-Insertion-12
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139-Insertion-12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 4e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 1615200 - 1615062
Alignment:
| Q |
8 |
tctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatg |
107 |
Q |
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| T |
1615200 |
tctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatg |
1615101 |
T |
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| Q |
108 |
tttcagctgcactgcaccgtatcggttttattttcttctctttg |
151 |
Q |
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| T |
1615100 |
tttca-----actgcaccgtatcggttttattttcttctctttg |
1615062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 24455897 - 24456029
Alignment:
| Q |
12 |
catgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttc |
111 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||| | || | | |
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| T |
24455897 |
catgtggactaatgtaatgcaacagcagtgttttggtattgcagctgctacgtagtggtattttttcctccctatgttctgatttttctc--tgtggtcc |
24455994 |
T |
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| Q |
112 |
agctgcactgcaccgtatcggttttattttcttctctttg |
151 |
Q |
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| T |
24455995 |
ag-----ctgcaccatatcggttttattttcttctctttg |
24456029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 49234472 - 49234366
Alignment:
| Q |
12 |
catgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttc |
111 |
Q |
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| T |
49234472 |
catgtgggctaatgtaatgcagcagcagtgttttggtactgcagctgctacatagtggcattttttcctccctgtgttctgatttgtctatttgtgttcc |
49234373 |
T |
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| Q |
112 |
agctgca |
118 |
Q |
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| T |
49234372 |
agctgca |
49234366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 49233901 - 49233795
Alignment:
| Q |
12 |
catgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttc |
111 |
Q |
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| T |
49233901 |
catgtggactaatgtagtgcagcagcagtgttttggtactacagctgctacatagtggcattctttcctccctgtgttttgatttgtctatttgtgttcc |
49233802 |
T |
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| Q |
112 |
agctgca |
118 |
Q |
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| T |
49233801 |
agctgca |
49233795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 43228133 - 43228223
Alignment:
| Q |
12 |
catgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctct |
102 |
Q |
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|||||||||||||||||||||||||||||||||| | | ||||||| ||| | ||||| ||||||| |||| | |||||||||| ||||| |
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| T |
43228133 |
catgtggactaatgtagtgcagcagcagtgtttttgcactgcagcttctacctggtggcgttttttcctccctgcgttctgatttgtctct |
43228223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 14839171 - 14839298
Alignment:
| Q |
16 |
tggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagct |
115 |
Q |
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| T |
14839171 |
tggactaatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagttttttcctccctacgttctgatttgtctc--tgtgttccag-- |
14839266 |
T |
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| Q |
116 |
gcactgcaccgtatcggttttattttcttctcttt |
150 |
Q |
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| T |
14839267 |
---ctgcaacatatcggttttattttcttctcttt |
14839298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 50862576 - 50862682
Alignment:
| Q |
12 |
catgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttc |
111 |
Q |
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| T |
50862576 |
catgtggactaatgtagtgtatcagcactgctttggtactgcagctggtacatagtggcgttttttcctccctgtgttctgatttgtctatttgtgttcc |
50862675 |
T |
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| Q |
112 |
agctgca |
118 |
Q |
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| T |
50862676 |
aactgca |
50862682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 27962519 - 27962392
Alignment:
| Q |
16 |
tggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagct |
115 |
Q |
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| T |
27962519 |
tggactaatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagttttttcctccctacgttctgatttgtctc--tgtgttccag-- |
27962424 |
T |
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| Q |
116 |
gcactgcaccgtatcggttttattttcttctcttt |
150 |
Q |
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||||| | |||||||||||||||||||||||| |
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| T |
27962423 |
---ctgcaacatatcggttttattttcttctcttt |
27962392 |
T |
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