View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139-Insertion-13 (Length: 167)
Name: NF5139-Insertion-13
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139-Insertion-13 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 1e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 1e-85
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 43054962 - 43055121
Alignment:
| Q |
8 |
gtcttgacgaaatgagttcatgtgtgtgataacatctacattagaaaacctcgacccttcatagaatgcttgagcttcaactttgtcgtagtagatgcca |
107 |
Q |
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| T |
43054962 |
gtcttgacgaaatgagttcatgtgtgtgataacatctacattagaaaacctcgacccttcatagaatgcttgagcttcaactttgtcgtagtagatgcca |
43055061 |
T |
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| Q |
108 |
agttttttgtttgggttgtgggatgtgaagttgagcaccatgttgtagtatagtgtgttg |
167 |
Q |
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| T |
43055062 |
agttttttgtttgggttgtgggatgtgaagttgagcaccatgttgtagtatagtgtgttg |
43055121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 43062220 - 43062372
Alignment:
| Q |
15 |
cgaaatgagttcatgtgtgtgataacatctacattagaaaacctcgacccttcatagaatgcttgagcttcaactttgtcgtagtagatgccaagttttt |
114 |
Q |
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| T |
43062220 |
cgaaacgagttcatgtgtgtgatcacatcgacatttgcaaatctcgatccttcatagaaagctcgagcttcaactttatcgtaatagatgctaagttttt |
43062319 |
T |
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| Q |
115 |
tgtttgggttgtgggatgtgaagttgagcaccatgttgtagtatagtgtgttg |
167 |
Q |
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| T |
43062320 |
tgtttgggttgtgtgctgtgaaattgagcaccatgtcgtagtgtagtgtgttg |
43062372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 43049435 - 43049583
Alignment:
| Q |
15 |
cgaaatgagttcatgtgtgtgataacatctacattagaaaacctcgacccttcatagaatgcttgagcttcaactttgtcgtagtagatgccaagttttt |
114 |
Q |
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| T |
43049435 |
cgaaatgagttcatgtgtgtgatcacatcaacattggcaaaccttgacccttcgtagaatgctcgtgcctccactttatcataatagatgttgagttttt |
43049534 |
T |
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| Q |
115 |
tgtttgggttgtgggatgtgaagttgagcaccatgttgtagtatagtgt |
163 |
Q |
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| T |
43049535 |
tgtttggattacgtgctgtgaagttgagcaccatgttgtagtttagtgt |
43049583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 43024301 - 43024425
Alignment:
| Q |
32 |
tgtgataacatctacattagaaaacctcgacccttcatagaatgcttgagcttcaactttgtcgtagtagatgccaagttttttgtttgggttgtgggat |
131 |
Q |
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| T |
43024301 |
tgtgatcacatccacattcgccaaccttgaaccttcgtagaatgctcgtgcctcaactttgtcgtaatagaagttgagttttttgtttgggttgcgagcg |
43024400 |
T |
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| Q |
132 |
gtgaagttgagcaccatgttgtagt |
156 |
Q |
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| T |
43024401 |
gtgaagttgagcaccatgttgtagt |
43024425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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