View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139-Insertion-3 (Length: 692)
Name: NF5139-Insertion-3
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 579
Target Start/End: Complemental strand, 32482727 - 32482156
Alignment:
| Q |
8 |
gaaacatcatcgtttttgttgtaccaaaatagtgtctcttgtggtggaatatgaccttgttgttgtgattcttctccttggtttcctcttccacctccac |
107 |
Q |
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| T |
32482727 |
gaaacatcatcgtttttgttgtaccaaaatagtgtctcttgtggtggaatatgaccttgttgttgtgattcttctccttggtttcctcttccacctcctc |
32482628 |
T |
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| Q |
108 |
ctaatgagaacaaaccagccatttctttgaagnnnnnnnccttaaccctaacaacaatagtttctttaattgtgtctcaatttccatatcgaaaacctaa |
207 |
Q |
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| T |
32482627 |
ctaatgagaacaaaccagccatttctttgaagaaaaaaaccttaaccctaacaacaatactttctttaattgtgtctcaatttccatatcaaaaacctaa |
32482528 |
T |
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| Q |
208 |
ataggnnnnnnnnnnnnggtacaaagaacatgagaaatcaagaaacagttgagagagaattaattgggatttgtgaaaaatggtttatgggataccgtgt |
307 |
Q |
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| T |
32482527 |
ataggttttttgtttttggtacaaagaacatgagaaatcaagaaacagttgagagagaattaattgggatttgtgaaaaatggtttatgggataccgtgt |
32482428 |
T |
|
| Q |
308 |
tttgtgtgcgtctccagaaaattacacaaaacaaaacacagagaaaatgaaaacataagtatatgtctccttgttatggttgggaaaagagtatagtaat |
407 |
Q |
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| T |
32482427 |
tttgtgtgcgtctccagaaaattacacaaaacaaaacacagagaaaatgaaaacataagtatatgtctccttgttatggttgggaaaagagtatagtaat |
32482328 |
T |
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| Q |
408 |
tgaattgaattgaagttaataagaaaaagaaggacagaaaacagaaacagacggctaaacagtgtcgtggcagcaagcagcgttaatcacgctttcaata |
507 |
Q |
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| T |
32482327 |
tgaattgaattgaagttaataagaaaaagaaggacagaaaacagaaacagacggctaaacagtgtcgtggcagcaagcagcgttaatcacgctttcaata |
32482228 |
T |
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| Q |
508 |
tcacttcccagctagcagctatagcttccttcaacgtttgtttttgtgtaatactcctaacttatgtttttt |
579 |
Q |
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| T |
32482227 |
tcacttcccagctagcagctatagcttccttcaacgtttgtttttgtgtaatactcctaacttatgtttttt |
32482156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 631 - 692
Target Start/End: Complemental strand, 32482105 - 32482044
Alignment:
| Q |
631 |
gaacagtaccacagtctttttacagctatctctgcactgcaaacgccgccatgcccctctct |
692 |
Q |
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| T |
32482105 |
gaacagtaccacagtctttttacagctatctctgcactgcaaacgccgccatgcccctctct |
32482044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 11308535 - 11308502
Alignment:
| Q |
308 |
tttgtgtgcgtctccagaaaattacacaaaacaa |
341 |
Q |
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| T |
11308535 |
tttgtgtgcgtctccagaaaattccacaaaacaa |
11308502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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