View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139-Insertion-4 (Length: 523)
Name: NF5139-Insertion-4
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139-Insertion-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 7 - 523
Target Start/End: Complemental strand, 9283938 - 9283423
Alignment:
| Q |
7 |
atgtgattcgtatcgtcgagcataactgatttcatggagaagtggacaaaactgattgactgttatgaattgcttgataatgaatggttgagaggatatt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9283938 |
atgtgattcgtatcgtcgagcataactgatttcatggagcagtggacaaaactgattgactgttatgaattgcttgataatgaatggttgagaggataat |
9283839 |
T |
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| Q |
107 |
tgttaagcgacatgaataaactactttggaagataagagttgaaagggctatctaatgagagacatgaattgaatgaaccactcannnnnnnaggcacaa |
206 |
Q |
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| T |
9283838 |
tgttaagcgacatgaataaactactttggaagataagagttgaaagggctatttaatgagagacatgaattgaatgaaccactcatttttttaggcacaa |
9283739 |
T |
|
| Q |
207 |
catcatatgaatggtaaaccatcatcatatgagagacatgaatgaaccgctgccttgggatatgagagttgaaaatgatagttgcagacttgcaacaact |
306 |
Q |
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| T |
9283738 |
catcatatgaatgataaaccatcatcatatgagagacatgaatgaaccactgctttgggatatgagagttgaaaatgatagttgcagacttgcaacaact |
9283639 |
T |
|
| Q |
307 |
atttattttgcgttaagtggttatgacacaacagcctacatttacaatattagcagtaaggatgataattagaatctagactttctgtcatatattgttg |
406 |
Q |
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| T |
9283638 |
atttattttgcgttaagtggttatgacacaacagcttacatttacaatattagcagtaaggatgataattagaatctagactttctgtcatatattgttg |
9283539 |
T |
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| Q |
407 |
cagcaactatttatttagctttattttattgttgttgaaacagtcattatgaattacttttgttctctgtacattttggtgtgttttgtctctttgatcg |
506 |
Q |
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| T |
9283538 |
cagcaactatttatttagctttattttattgttgttgaaacagtcattatgaattacttttgttctctgtacattttggt-agttttgtctctttgatcg |
9283440 |
T |
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| Q |
507 |
tgtcgaaatgttgttgc |
523 |
Q |
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| T |
9283439 |
tgtcgaaatgttgttgc |
9283423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 23557714 - 23557787
Alignment:
| Q |
24 |
gagcataactgatttcatggagaagtggacaaaactgattgactgttatgaattgcttgataatgaatggttga |
97 |
Q |
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| T |
23557714 |
gagcataagtgatttcatggagaagtgggaaaaaatgattgaatgttatgaacttcatgataatgaatggttga |
23557787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 17831983 - 17831904
Alignment:
| Q |
19 |
tcgtcgagcataactgatttcatggagaagtg-gacaaaactgattgactgttatgaattgcttgataatgaatggttga |
97 |
Q |
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| T |
17831983 |
tcgtcgagcatatttgatttcatggagaagtgaaaaaaaaaagattgaattttatgaactgcatgataatgaatggttga |
17831904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 35049798 - 35049873
Alignment:
| Q |
22 |
tcgagcataactgatttcatggagaagtggacaaaactgattgactgttatgaattgcttgataatgaatggttga |
97 |
Q |
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| T |
35049798 |
tcgagcatatctgatttcatggagaagtggaaaaaaatgattgaatgttacgaactgcatgataatgaatggttga |
35049873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 35051298 - 35051407
Alignment:
| Q |
199 |
aggcacaacatcatatgaatggtaaaccatcatcatatgagagacatgaatgaaccgctgccttgggatatgagagttgaaaatgatagttgcagacttg |
298 |
Q |
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| T |
35051298 |
aggcacaacaccatatgattgataaaccatcagaat--gag-gacatgaatgaaccacttctttgggagatgagagttgaagatgattgttgcagacttg |
35051394 |
T |
|
| Q |
299 |
caacaactattta |
311 |
Q |
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|| ||||||||| |
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| T |
35051395 |
cagaaactattta |
35051407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 54077519 - 54077446
Alignment:
| Q |
24 |
gagcataactgatttcatggagaagtggacaaaactgattgactgttatgaattgcttgataatgaatggttga |
97 |
Q |
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| T |
54077519 |
gagcataagtgatttcatggagaagtgggaaaaaatgattgaatgttatgaacttcatgataatgaatggttga |
54077446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 41699431 - 41699504
Alignment:
| Q |
24 |
gagcataactgatttcatggagaagtggacaaaactgattgactgttatgaattgcttgataatgaatggttga |
97 |
Q |
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|||||||| ||||||||||||||||||| |||| ||||||| ||||||||| | | ||||||||||||||||| |
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| T |
41699431 |
gagcataagtgatttcatggagaagtgggaaaaaatgattgaatgttatgaacttcatgataatgaatggttga |
41699504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 41705025 - 41705098
Alignment:
| Q |
24 |
gagcataactgatttcatggagaagtggacaaaactgattgactgttatgaattgcttgataatgaatggttga |
97 |
Q |
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|||||||| ||||||||||||||||||| |||| ||||||| ||||||||| | | ||||||||||||||||| |
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| T |
41705025 |
gagcataagtgatttcatggagaagtgggaaaaaatgattgaatgttatgaacttcatgataatgaatggttga |
41705098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 49245200 - 49245296
Alignment:
| Q |
24 |
gagcataactgatttcatggagaagtggacaaaactgattgactgttatgaattgcttgataatgaatggttgaga-ggatatttgttaagcgacat |
119 |
Q |
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||||| || ||||||||| |||| |||| |||| ||||||| |||||||| | | ||||||||||||||||| | ||||||||| | |||||||| |
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| T |
49245200 |
gagcaaaagtgatttcatagagatgtgggaaaaaatgattgaatgttatgagatacatgataatgaatggttgaaagggatatttgatgagcgacat |
49245296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 13388174 - 13388247
Alignment:
| Q |
25 |
agcataactgatttcatggagaagtggacaaaac-tgattgactgttatgaattgcttgataatgaatggttga |
97 |
Q |
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|||||| |||||||||||||||| |||| |||| ||||||| ||||||||| ||| ||||||||||||||||| |
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| T |
13388174 |
agcatatctgatttcatggagaattggaaaaaaaatgattgaatgttatgaactgcatgataatgaatggttga |
13388247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 53324324 - 53324215
Alignment:
| Q |
199 |
aggcacaacatcatatgaatggtaaaccatcatcatatgagagacatgaatgaaccgctgccttgggatatgagagttgaaaatgatagttgcagacttg |
298 |
Q |
| |
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|||||||||| ||||||| || ||||||||||| || ||| |||||||||||||| || | |||| | | |||||||||| ||||| ||||||||||| |
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| T |
53324324 |
aggcacaacaccatatgattgataaaccatcataat--gag-gacatgaatgaaccacttctttggaagacgagagttgaagatgattgttgcagacttt |
53324228 |
T |
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| Q |
299 |
caacaactattta |
311 |
Q |
| |
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|| ||||||||| |
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| T |
53324227 |
cagaaactattta |
53324215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 26301855 - 26301951
Alignment:
| Q |
24 |
gagcataactgatttcatggagaagtggacaaaactgattgactgttatgaattgcttgataatgaatggttgagagg-atatttgttaagcgacat |
119 |
Q |
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||||| || ||||||||| |||| || | |||| ||||||| ||||||||| | ||||||||||||||||| ||| ||||||| |||||||||| |
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| T |
26301855 |
gagcaaaagtgatttcatagagaggtaggaaaaaatgattgaatgttatgaactatatgataatgaatggttgaaaggtatatttgataagcgacat |
26301951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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