View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5139-Insertion-5 (Length: 442)
Name: NF5139-Insertion-5
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139-Insertion-5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 41686070 - 41686496
Alignment:
| Q |
8 |
ggaaatggacaagctattgcttcaaaaccattcttcgtatcgatctatggtatatgagtaaatctaatttttagatatttattttaaattgaaattcacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41686070 |
ggaaatggacaagctattgcttcaaaaccattcttcgtatcaatctatggtatatgagtaaatctaatttttagatatttattttaaattgaaattcacc |
41686169 |
T |
|
| Q |
108 |
gtgtattattcttgtgttttgttcttacgttgtgaacttgtgttaatttagaggccaaggtggttttcagctgttgatcaagagttactgcaggccagat |
207 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41686170 |
gcgtattattcttgtgttttgttcttacgttgtgaacttgtgttaatttagaggccaaggtggttttcagctgttgatcaagagttactgcaggccagat |
41686269 |
T |
|
| Q |
208 |
cagagattgaaaatgcaccagttgtcaatgatgttggaaacctttatactcccctttttcgcaacatttccatgtttaagaggtatcatttgnnnnnnnn |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41686270 |
cagagattgaaaatgcaccagttgtcactgatgttggaaacctttatactcccctttttcgcaacatttccatgtttaagaggtatcatttg---attat |
41686366 |
T |
|
| Q |
308 |
nnnnnnnnnggtattttctgttttcaaaattgtatacaagggaaactgattctattcctgcaatgtacagatttaatgatattttttgtaatatgtgaac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41686367 |
tattattatggtattttctgttttcaaaattgtatacaagggaaactgattctattcctgcaatgtacagatttaatgata-tttttgtaatatgtgaac |
41686465 |
T |
|
| Q |
408 |
tatattttgtttcgacattttagcgacattt |
438 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
|
|
| T |
41686466 |
tgtattttgtttcgacattttagcgacattt |
41686496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 114 - 299
Target Start/End: Original strand, 51205797 - 51205978
Alignment:
| Q |
114 |
tattcttgtgttttgttcttacgttgtgaacttgtgttaatttagaggccaaggtggttttcagctgttgatcaagagttactgcaggccagatcagaga |
213 |
Q |
| |
|
|||||||||||| |||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
51205797 |
tattcttgtgttctgttcttattttgctaacttgtgtt----tagaggccaaggtggtcttcagctgttgatcaagagctactgctggccagatcagaga |
51205892 |
T |
|
| Q |
214 |
ttgaaaatgcaccagttgtcaatgatgttggaaacctttatactcccctttttcgcaacatttccatgtttaagaggtatcatttg |
299 |
Q |
| |
|
||||||||| |||||||| | |||||||||||| |||||| |||| ||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
51205893 |
ttgaaaatgttccagttgtaactgatgttggaaatctttatgctcctctttttcacaatgtttccatgtttaagaggtatcatttg |
51205978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 51205712 - 51205770
Alignment:
| Q |
12 |
atggacaagctattgcttcaaaaccattcttcgtatcgatctatggtatatgagtaaat |
70 |
Q |
| |
|
||||| ||| |||||||||||| |||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
51205712 |
atggataagttattgcttcaaagccatgcttcgtatcgatccatggtatacgagtaaat |
51205770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 52907 - 52985
Alignment:
| Q |
154 |
tttagaggccaaggtggttttcagctgttgatcaagagttactgcaggccagatcagagattgaaaatgcaccagttgt |
232 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |
|
|
| T |
52907 |
tttagaagccgaggtggttttcaaatgttgatcaagagttactacaggcaagatcagagattgaaaatgcaccaattgt |
52985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 52785 - 52836
Alignment:
| Q |
9 |
gaaatggacaagctattgcttcaaaaccattcttcgtatcgatctatggtat |
60 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
52785 |
gaaatgaacaagttattgcttcaaagccatgcttcgtatcgatcaatggtat |
52836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University