View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139-Insertion-6 (Length: 406)
Name: NF5139-Insertion-6
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 7744626 - 7744335
Alignment:
| Q |
7 |
accaacaacgtgtcatataccagatacgccttcgatcatctagtacagctcagattcaactgcatgcacattgttactgtacttgacctagaacaaaagg |
106 |
Q |
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| T |
7744626 |
accaacaacgtgtcatataccagatacgccttcgatcatctagtacagctcagattcaactgcatgcacattgttactgtacttgacctagaacaaaagg |
7744527 |
T |
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| Q |
107 |
atgtttcatggaggaatatgagagtatcctacatagtagtacctgtgccactttatagacttggtgtagtcattgcagccgcaggatataaattcaaaga |
206 |
Q |
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| T |
7744526 |
atgtttcatggaggaatatgagagtatcctacatagtagtacctgtgccactttatagacttggtgtagtcattgcagccgcaggatataaattcaaaga |
7744427 |
T |
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| Q |
207 |
caaagtttcctaacatggcaaaatatatagtcgtccttttcctgcatacctgctgagatcc-ttttctccatatgaatgcgacgtcttatgc |
297 |
Q |
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| T |
7744426 |
caaagtttcctaacatggcaaaatatatagtcgtccttttccttcatacctgctgagatcctttttctccagatgaatgcgacgtcttatgc |
7744335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 7744274 - 7744224
Alignment:
| Q |
356 |
gccaaaaccttaaactttttgttgttgacttggcttcacacacaaacacag |
406 |
Q |
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| T |
7744274 |
gccaaaaccttaaactttttgttgttgacttggcttcacacacaaacacag |
7744224 |
T |
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