View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139-Insertion-8 (Length: 300)
Name: NF5139-Insertion-8
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139-Insertion-8 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: scaffold0722 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 2715 - 3007
Alignment:
| Q |
8 |
gttgttggtggcggtgttttagagttgatattgaatttgaatttgaatgaatgtttggttttttggttgtattgtagtggttgagattgaagttgttatg |
107 |
Q |
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| T |
2715 |
gttgttggtggtggtgttttagagttgatattgaatttgaatttgaatgaatgtttggttttttggtagtattgtagtggttgagattgaagttgttatg |
2814 |
T |
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| Q |
108 |
aatgaatgatgattttccaaatttcttgatgaagttgtttagagaagttgaagatttgaagttgttgtttgagatgttgaggaatttaagattgtttaga |
207 |
Q |
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| T |
2815 |
aatgaatgatgattttccaaatttcttgatgaagttgtttagagaagttgaagatttgaagttgttgtttgagatgttgaggaatttaagattgtttaga |
2914 |
T |
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| Q |
208 |
gaaggaaaatcagacgggaaactaccattcaaagagttgtttgaaaggtttaagaaagagagtgaagtaagataagaaatgggtttgatgttt |
300 |
Q |
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| T |
2915 |
gaaggaaaatcagacgggaaactaccattcaaagagttgtttgaaaggtttaagaaagagagtgaagtaagataagaaatgggtttgatgttt |
3007 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 35882278 - 35882191
Alignment:
| Q |
164 |
tgaagttgttgtttgagatgttgaggaatttaagattgtttagagaaggaaaatcagacgggaaactaccattcaaagagttgtttga |
251 |
Q |
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| T |
35882278 |
tgaagttgttttgtgaaatgttgagaaatttaagattgtgaagtggaggaaaatcagaagggaaattaccagttaaagtgttgtttga |
35882191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 24456479 - 24456392
Alignment:
| Q |
164 |
tgaagttgttgtttgagatgttgaggaatttaagattgtttagagaaggaaaatcagacgggaaactaccattcaaagagttgtttga |
251 |
Q |
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| T |
24456479 |
tgaagttgttttgtgaaatgttgagaaatttaagattgtgaagtggaggaaaatcagaagggaaattaccagttaaagtgttgtttga |
24456392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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