View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139-Insertion-9 (Length: 223)
Name: NF5139-Insertion-9
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139-Insertion-9 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 437521 - 437736
Alignment:
| Q |
8 |
gaaacaaaattatctgatgccaaaatgtcccctaaaactccaagttytggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaat |
107 |
Q |
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| T |
437521 |
gaaacaaaattatctgatgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacgat |
437620 |
T |
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| Q |
108 |
tcccttgtccaactatatataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataaga |
207 |
Q |
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| T |
437621 |
tcccttgtccaactatatataaattgcaataaaaattttctagttcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataaga |
437720 |
T |
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| Q |
208 |
tatagaatcattgttg |
223 |
Q |
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| T |
437721 |
tatagaatcattgttg |
437736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 9e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 9e-56
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 28609379 - 28609168
Alignment:
| Q |
12 |
caaaattatctgatgccaaaatgtcccctaaaactccaagttytggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattccc |
111 |
Q |
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||||||| | |||||| ||||| ||||||||||| ||||||| |||||| |||||||| |||||||| ||||||||||| ||| ||||||||| ||| || |
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| T |
28609379 |
caaaattgtttgatgctaaaatatcccctaaaaccccaagttctggacagtcacaccattccaataagtttaaaaagactcgagtgttcctacgatttcc |
28609280 |
T |
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| Q |
112 |
ttgtccaactatatataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatata |
211 |
Q |
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| T |
28609279 |
ctgtccaactatgtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatata |
28609180 |
T |
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| Q |
212 |
gaatcattgttg |
223 |
Q |
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| T |
28609179 |
gaatcattgttg |
28609168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 13653249 - 13653040
Alignment:
| Q |
13 |
aaaattatctgatgccaaaatgtcccctaaaactccaagttytggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattccct |
112 |
Q |
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| T |
13653249 |
aaaattgtttgatgccaacatatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttctatgatgccct |
13653150 |
T |
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| Q |
113 |
tgtccaactatatataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatag |
212 |
Q |
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| T |
13653149 |
tgtccaactatgtataaatcacaaccaaatttgtctaaatcatcaaggattgtgggaatatcttcacctgaatggacatcaacctctgaataggatataa |
13653050 |
T |
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| Q |
213 |
aatcattgtt |
222 |
Q |
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| T |
13653049 |
aatcattgtt |
13653040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 13660749 - 13660540
Alignment:
| Q |
13 |
aaaattatctgatgccaaaatgtcccctaaaactccaagttytggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattccct |
112 |
Q |
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|||||| | ||||||||| || ||||| | ||||||||||| ||||||||||||||| ||||||||| || ||||| | ||| || ||| || |||| |
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| T |
13660749 |
aaaattgtttgatgccaacatatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttctatgatgccct |
13660650 |
T |
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| Q |
113 |
tgtccaactatatataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatag |
212 |
Q |
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| T |
13660649 |
tgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctccgaatatgatatag |
13660550 |
T |
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| Q |
213 |
aatcattgtt |
222 |
Q |
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| T |
13660549 |
aatcattgtt |
13660540 |
T |
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Back To:
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